Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016579.1 Corchorus olitorius cultivar O-4 contig16612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100557

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77--137
23
2.7
22
80
5
68
37
11
8
42
1.71
77--222
22
6.6
21
71
12
89
37
14
8
39
1.77
166--263
21
4.5
21
79
6
88
31
17
9
41
1.81
156--285
43
3.0
43
77
5
109
31
18
7
42
1.78
857--932
28
2.7
29
95
4
145
13
13
28
44
1.81
1736--1827
46
2.0
46
100
0
184
34
19
26
19
1.96
5988--7369
695
2.0
697
99
0
2714
40
12
13
33
1.83
7645--7696
27
1.9
26
85
14
70
48
0
9
42
1.36
8768--8794
2
13.5
2
100
0
54
51
0
0
48
1.00
17959--17990
3
10.7
3
100
0
64
68
0
0
31
0.90
19031--19079
3
16.3
3
91
0
80
61
0
0
38
0.96
21383--21668
43
6.8
43
85
4
404
42
27
10
19
1.83
21383--21668
41
6.8
41
85
7
387
42
27
10
19
1.83
21381--21668
84
3.4
84
91
2
436
42
27
10
19
1.83
23661--24671
503
2.0
503
90
0
1574
31
19
17
31
1.95
26804--26895
30
3.1
30
98
0
175
40
22
19
17
1.91
30298--30357
31
1.9
31
89
0
93
28
25
8
38
1.84
30313--30371
31
1.9
31
86
6
84
30
25
11
32
1.92
37322--37382
26
2.4
26
91
2
97
47
21
16
14
1.82
38732--38760
8
3.8
8
95
4
51
37
0
51
10
1.36
46013--46071
24
2.5
24
86
5
66
62
8
8
20
1.49
61028--61168
45
3.2
45
85
6
202
33
4
22
39
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61604--61672
2
37.5
2
83
16
96
50
0
0
49
1.00
61604--61671
9
7.9
9
85
8
88
50
0
0
50
1.00
70773--70818
24
1.9
24
90
0
74
50
13
13
23
1.76
75566--75599
16
2.3
14
90
10
50
47
0
14
38
1.45
76495--76526
16
2.0
16
100
0
64
37
0
43
18
1.51
81349--81409
21
3.0
20
83
6
79
34
18
11
36
1.86
82843--84018
336
3.6
329
81
5
1354
36
17
14
31
1.90
84045--84230
95
1.9
98
87
3
279
50
4
9
34
1.57
84410--84450
16
2.7
15
80
20
50
0
12
14
73
1.11
85933--85963
11
2.8
11
95
0
53
19
22
9
48
1.78
86164--86197
3
11.0
3
87
6
50
64
32
2
0
1.08
86164--86194
16
1.9
16
93
0
53
64
32
3
0
1.09
88986--89044
30
2.0
30
86
0
82
47
8
16
27
1.76
90775--90888
13
8.5
13
69
21
65
54
13
0
31
1.45
91043--91104
32
1.9
32
86
0
88
19
32
32
16
1.94
91753--91795
23
1.9
22
90
4
68
41
0
6
51
1.29
92710--92794
33
2.6
33
80
0
107
10
36
36
16
1.83
93066--93121
29
2.0
28
92
3
94
28
10
21
39
1.87
100155--100235
39
2.0
40
92
2
137
50
8
3
37
1.51

Tables:   1

The End!