Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016583.1 Corchorus olitorius cultivar O-4 contig16616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4195
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28


Found at i:3958 original size:18 final size:17

Alignment explanation


    Indices: 3931--3981  Score: 59
    Period size: 17  Copynumber: 3.0  Consensus size: 17

       3921 TGGATTTCAT

                 *            
       3931 ATTTCATTTACTATTTTC
          1 ATTTCTTTTA-TATTTTC

                       *     
       3949 ATTTCTTTTATTTTTTC
          1 ATTTCTTTTATATTTTC

               *             
       3966 ATTCCTTTT-TATTTTC
          1 ATTTCTTTTATATTTTC

       3982 TTTTAACAAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  16    6  0.21
  17   14  0.48
  18    9  0.31

ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69


Consensus pattern (17 bp):   
ATTTCTTTTATATTTTC

Done.