Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016586.1 Corchorus olitorius cultivar O-4 contig16619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41884
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:2614 original size:27 final size:27
Alignment explanation
Indices: 2572--2644 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
2562 AGTGAGCTTA
* * *
2572 AAATGACCGAGATGCCCTTGAACGTGC
1 AAATGACCAAAATGCCCCTGAACGTGC
* *
2599 AAATGACCAAACTGCCCCTGGACGTGC
1 AAATGACCAAAATGCCCCTGAACGTGC
2626 AAATGACCAAAATGCCCCT
1 AAATGACCAAAATGCCCCT
2645 AGGTGACCCT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.33, C:0.30, G:0.21, T:0.16
Consensus pattern (27 bp):
AAATGACCAAAATGCCCCTGAACGTGC
Found at i:2981 original size:10 final size:10
Alignment explanation
Indices: 2966--3001 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
2956 ATTACAATTT
2966 ATAATTAATA
1 ATAATTAATA
2976 ATAATT-A-A
1 ATAATTAATA
2984 ATAATTAATA
1 ATAATTAATA
2994 ATAATTAA
1 ATAATTAA
3002 AAAAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 7 0.29
9 2 0.08
10 15 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAATTAATA
Found at i:2989 original size:18 final size:18
Alignment explanation
Indices: 2966--3002 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2956 ATTACAATTT
2966 ATAATTAATAATAATTAA
1 ATAATTAATAATAATTAA
2984 ATAATTAATAATAATTAA
1 ATAATTAATAATAATTAA
3002 A
1 A
3003 AAAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATTAATAATAATTAA
Found at i:3112 original size:12 final size:12
Alignment explanation
Indices: 3095--3119 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3085 CTACAAAATC
3095 CGACATGATTTT
1 CGACATGATTTT
3107 CGACATGATTTT
1 CGACATGATTTT
3119 C
1 C
3120 TTCAAGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (12 bp):
CGACATGATTTT
Found at i:5324 original size:201 final size:201
Alignment explanation
Indices: 4979--5380 Score: 804
Period size: 201 Copynumber: 2.0 Consensus size: 201
4969 TTTCCTTTTA
4979 TTATTTTTGAATTAAACAATATATATAACTTATTCTTTAGTGGCTATACCGCTCTTTTCTATTTG
1 TTATTTTTGAATTAAACAATATATATAACTTATTCTTTAGTGGCTATACCGCTCTTTTCTATTTG
5044 AATTTTAGTTTTAATATGAGACTGATTATTATTCGCATTCTTGAATTTTCAATTGGTTGCATATA
66 AATTTTAGTTTTAATATGAGACTGATTATTATTCGCATTCTTGAATTTTCAATTGGTTGCATATA
5109 GGAACTGCATGTTTACATGCTATTATGAAATCATAAGTGAACTCCTTCGTATAACTTTCACTTTT
131 GGAACTGCATGTTTACATGCTATTATGAAATCATAAGTGAACTCCTTCGTATAACTTTCACTTTT
5174 TGGGAG
196 TGGGAG
5180 TTATTTTTGAATTAAACAATATATATAACTTATTCTTTAGTGGCTATACCGCTCTTTTCTATTTG
1 TTATTTTTGAATTAAACAATATATATAACTTATTCTTTAGTGGCTATACCGCTCTTTTCTATTTG
5245 AATTTTAGTTTTAATATGAGACTGATTATTATTCGCATTCTTGAATTTTCAATTGGTTGCATATA
66 AATTTTAGTTTTAATATGAGACTGATTATTATTCGCATTCTTGAATTTTCAATTGGTTGCATATA
5310 GGAACTGCATGTTTACATGCTATTATGAAATCATAAGTGAACTCCTTCGTATAACTTTCACTTTT
131 GGAACTGCATGTTTACATGCTATTATGAAATCATAAGTGAACTCCTTCGTATAACTTTCACTTTT
5375 TGGGAG
196 TGGGAG
5381 CTCAAAATCC
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 201 1.00
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.44
Consensus pattern (201 bp):
TTATTTTTGAATTAAACAATATATATAACTTATTCTTTAGTGGCTATACCGCTCTTTTCTATTTG
AATTTTAGTTTTAATATGAGACTGATTATTATTCGCATTCTTGAATTTTCAATTGGTTGCATATA
GGAACTGCATGTTTACATGCTATTATGAAATCATAAGTGAACTCCTTCGTATAACTTTCACTTTT
TGGGAG
Found at i:6311 original size:6 final size:6
Alignment explanation
Indices: 6295--6342 Score: 78
Period size: 6 Copynumber: 7.7 Consensus size: 6
6285 AAGTTTTATC
6295 TTTCTTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTTT TTTCTT TTTC
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TTTC-TT TTTCTT TTTC
6343 CTTGTTTTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 30 0.75
7 10 0.25
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:6311 original size:13 final size:13
Alignment explanation
Indices: 6295--6342 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
6285 AAGTTTTATC
6295 TTTCTTTTT-TCTT
1 TTTCTTTTTCT-TT
6308 TTTCTTTTTC-TT
1 TTTCTTTTTCTTT
6320 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
6333 TTTCTTTTTC
1 TTTCTTTTTC
6343 CTTGTTTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.36
13 21 0.64
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTCTTTTTCTTT
Found at i:12401 original size:6 final size:6
Alignment explanation
Indices: 12392--12427 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
12382 GAGCTTTATC
12392 TTTTCT TTTTCTT TTGTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTC-T TT-TTCT TTTTCT TTTTCT TTTT
12428 TTCTCTCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 19 0.68
7 6 0.21
8 3 0.11
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:12417 original size:20 final size:20
Alignment explanation
Indices: 12392--12431 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
12382 GAGCTTTATC
12392 TTTTCTTTTTCTTTTGTTCT
1 TTTTCTTTTTCTTTTGTTCT
*
12412 TTTTCTTTTTCTTTTTTTCT
1 TTTTCTTTTTCTTTTGTTCT
12432 CTCTCTCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTCTTTTTCTTTTGTTCT
Found at i:12428 original size:14 final size:14
Alignment explanation
Indices: 12392--12431 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
12382 GAGCTTTATC
12392 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
*
12406 TGTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
12420 TTCTT-TTTTTCT
1 TT-TTCTTTTTCT
12432 CTCTCTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 21 0.91
15 2 0.09
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:13156 original size:14 final size:14
Alignment explanation
Indices: 13137--13186 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
13127 CTCAAAAACC
13137 TTTTGAAAACACTT
1 TTTTGAAAACACTT
13151 TTTTG-AAAC-CTT
1 TTTTGAAAACACTT
13163 TTCTTGAAAACA-TAT
1 TT-TTGAAAACACT-T
13178 TTTTGAAAA
1 TTTTGAAAA
13187 ACCTCTTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.16
13 7 0.22
14 17 0.53
15 3 0.09
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (14 bp):
TTTTGAAAACACTT
Found at i:13791 original size:47 final size:46
Alignment explanation
Indices: 13671--13811 Score: 210
Period size: 46 Copynumber: 3.0 Consensus size: 46
13661 TGATCTTATC
13671 TTATCTTTTTGTTCAAAACACAATTGTTTATTCAAAAGAATCTAGT
1 TTATCTTTTTGTTCAAAACACAATTGTTTATTCAAAAGAATCTAGT
* *
13717 TTATCTTTTTGTTCAAAACACATTTGTTTATTCAAAATAATCTAGT
1 TTATCTTTTTGTTCAAAACACAATTGTTTATTCAAAAGAATCTAGT
* * ** *
13763 TTATCTTTTTTTTTCAAAACACACTTGTTTATTCGGAAGAATCTTGT
1 TTATC-TTTTTGTTCAAAACACAATTGTTTATTCAAAAGAATCTAGT
13810 TT
1 TT
13812 TGCTTATTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 49 0.57
47 37 0.43
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (46 bp):
TTATCTTTTTGTTCAAAACACAATTGTTTATTCAAAAGAATCTAGT
Found at i:16118 original size:36 final size:36
Alignment explanation
Indices: 15958--16209 Score: 296
Period size: 36 Copynumber: 6.9 Consensus size: 36
15948 AAAAATGCTT
* * *
15958 TTGATGGGAACTTTCCCACTCTGAAAAC-TAAAGCTGAAA
1 TTGATGGGAACTTTCCCAATTTGAAAACTTAAA----AAC
* * *
15997 ATGACGGGAACTTTCCCTAAATTGAAAAC-T-AAAAC
1 TTGATGGGAACTTTCCC-AATTTGAAAACTTAAAAAC
* * *
16032 CTGGTGGGAACTTTCCTAATTTGAAAAC-TAAAGAGAC
1 TTGATGGGAACTTTCCCAATTTGAAAACTTAAA-A-AC
*
16069 TTGATGGGAACTTTCCCGATTTGAAAACTTAAAAAC
1 TTGATGGGAACTTTCCCAATTTGAAAACTTAAAAAC
* * *
16105 TTGATGGGGACTTTCCTAATTTGAAAACTCAAAAAC
1 TTGATGGGAACTTTCCCAATTTGAAAACTTAAAAAC
16141 TTGATGGGAACTTTCCCAATTTGAAAACTTAAAAAC
1 TTGATGGGAACTTTCCCAATTTGAAAACTTAAAAAC
16177 TTGATGGGAACTTTCCCAATTTGAAAACTTAAA
1 TTGATGGGAACTTTCCCAATTTGAAAACTTAAA
16210 TTGAATACTT
Statistics
Matches: 186, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
34 11 0.06
35 17 0.09
36 101 0.54
37 27 0.15
38 4 0.02
39 17 0.09
40 9 0.05
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (36 bp):
TTGATGGGAACTTTCCCAATTTGAAAACTTAAAAAC
Found at i:16332 original size:54 final size:54
Alignment explanation
Indices: 16209--16573 Score: 472
Period size: 54 Copynumber: 6.8 Consensus size: 54
16199 GAAAACTTAA
* * * * * *
16209 ATTGAATACTTTGAAAACT-GATGGGAACTTTCTCGACTTG--AAAAAGAGCTAA
1 ATTGAATACTTTGAAGATTAG-TGGGAACTTTCCCAATTTGAAAAAAAGAGCTAG
* *
16261 ATTGAATGCTTTGAAGATTGGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTAG
1 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTAG
* * * * *
16315 ATTGAACACTTTAAAGATTGGTGGGAACTTTTCCAATTTAAAAAAAAAGAGCTAG
1 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTT-GAAAAAAAGAGCTAG
* * *
16370 ATTGAATACTTTGAAGATTAGTGGGAACTTTTCCAATTTAAAAAAAAGAGTTAG
1 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTAG
* * *
16424 ATTGAAGACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAATAGCTAC
1 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTAG
* *
16478 ATTGAATACTTTGAAGATTAGTGTGAACTTTCCCAATTTG--AAAATGAGCTTA-
1 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGC-TAG
16530 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAA
1 ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAA
16574 TGAGCTTGAT
Statistics
Matches: 279, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
52 78 0.28
53 3 0.01
54 148 0.53
55 50 0.18
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (54 bp):
ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTAG
Found at i:16397 original size:109 final size:108
Alignment explanation
Indices: 16249--16573 Score: 458
Period size: 109 Copynumber: 3.0 Consensus size: 108
16239 TCTCGACTTG
* *
16249 AAAAAGAGCTAAATTGAATGCTTTGAAGATTGGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTA
1 AAAAAGAGCTAAATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTA
* * *
16314 GATTGAACACTTTAAAGATTGGTGGGAACTTTTCCAATTTAAAA
66 GATTGAACACTTTGAAGATTAGTGGGAACTTTCCCAATTT-AAA
* * * *
16358 AAAAAGAGCTAGATTGAATACTTTGAAGATTAGTGGGAACTTTTCCAATTTAAAAAAAAGAGTTA
1 AAAAAGAGCTAAATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTA
* *
16423 GATTGAAGACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAA
66 GATTGAACACTTTGAAGATTAGTGGGAACTTTCCCAATTTAAA
* * * *
16466 AAAAATAGCTACATTGAATACTTTGAAGATTAGTGTGAACTTTCCCAATTTG--AAAATGAGCTT
1 AAAAAGAGCTAAATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGC-T
* *
16529 A-ATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAA
65 AGATTGAACACTTTGAAGATTAGTGGGAACTTTCCCAATTTAAA
16572 AA
1 AA
16574 TGAGCTTGAT
Statistics
Matches: 196, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
106 50 0.26
107 2 0.01
108 49 0.25
109 95 0.48
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (108 bp):
AAAAAGAGCTAAATTGAATACTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAAAAGAGCTA
GATTGAACACTTTGAAGATTAGTGGGAACTTTCCCAATTTAAA
Found at i:16450 original size:163 final size:160
Alignment explanation
Indices: 16181--16573 Score: 471
Period size: 163 Copynumber: 2.5 Consensus size: 160
16171 AAAAACTTGA
* * *
16181 TGGGAACTTTCCCAATTT--GAAA-A-CTTAAATTGAATACTTTGAAAACT-GATGGGAACTTTC
1 TGGGAACTTTCCCAATTTAAAAAAGAGCTT-AATTGAATACTTTGAAGATTAG-TGGGAACTTTC
* * * * *
16241 TCGACTT--GAAAAAGAGCTAAATTGAATGCTTTGAAGATTGGTGGGAACTTTCCCAATTTGAAA
64 CCAATTTAAAAAAAAGAGCTAAATTGAATGCTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAA
* *
16304 AAAAGAGCTAGATTGAACACTTTAAAGATTGG
129 AAAAGAGCTACATTGAACACTTTAAAGATTAG
*
16336 TGGGAACTTTTCCAATTTAAAAAAAAAGAGC-TAGATTGAATACTTTGAAGATTAGTGGGAACTT
1 TGGGAACTTTCCCAATTT---AAAAAAGAGCTTA-ATTGAATACTTTGAAGATTAGTGGGAACTT
* * *
16400 TTCCAATTTAAAAAAAAGAGTTAGATTGAA-GACTTTGAAGATTAGTGGGAACTTTCCCAATTTG
62 TCCCAATTTAAAAAAAAGAGCTAAATTGAATG-CTTTGAAGATTAGTGGGAACTTTCCCAATTTG
* * *
16464 AAAAAAATAGCTACATTGAATACTTTGAAGATTAG
126 AAAAAAAGAGCTACATTGAACACTTTAAAGATTAG
* * *
16499 TGTGAACTTTCCCAATTTGAAAATGAGCTTAATTGAATACTTTGAAGATTAGTGGGAACTTTCCC
1 TGGGAACTTTCCCAATTTAAAAAAGAGCTTAATTGAATACTTTGAAGATTAGTGGGAACTTTCCC
*
16564 AATTTGAAAA
66 AATTTAAAAA
16574 TGAGCTTGAT
Statistics
Matches: 202, Mismatches: 23, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
155 17 0.08
160 54 0.27
161 35 0.17
162 3 0.01
163 93 0.46
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.32
Consensus pattern (160 bp):
TGGGAACTTTCCCAATTTAAAAAAGAGCTTAATTGAATACTTTGAAGATTAGTGGGAACTTTCCC
AATTTAAAAAAAAGAGCTAAATTGAATGCTTTGAAGATTAGTGGGAACTTTCCCAATTTGAAAAA
AAGAGCTACATTGAACACTTTAAAGATTAG
Found at i:16517 original size:27 final size:27
Alignment explanation
Indices: 16487--16571 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
16477 CATTGAATAC
16487 TTTGAAGATTAGTGTGAACTTTCCCAA
1 TTTGAAGATTAGTGTGAACTTTCCCAA
* * **** *
16514 TTTGAAAATGAGCT-T-AA-TTGAATAC
1 TTTGAAGATTAG-TGTGAACTTTCCCAA
*
16539 TTTGAAGATTAGTGGGAACTTTCCCAA
1 TTTGAAGATTAGTGTGAACTTTCCCAA
16566 TTTGAA
1 TTTGAA
16572 AATGAGCTTG
Statistics
Matches: 39, Mismatches: 15, Indels: 8
0.63 0.24 0.13
Matches are distributed among these distances:
24 1 0.03
25 13 0.33
26 4 0.10
27 20 0.51
28 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (27 bp):
TTTGAAGATTAGTGTGAACTTTCCCAA
Found at i:16627 original size:7 final size:7
Alignment explanation
Indices: 16592--16617 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16582 ATGAAATTCT
16592 TTTTTGA
1 TTTTTGA
16599 TTTTTGA
1 TTTTTGA
16606 TTTTTGA
1 TTTTTGA
16613 TTTTT
1 TTTTT
16618 TTTGGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.77
Consensus pattern (7 bp):
TTTTTGA
Found at i:19525 original size:27 final size:28
Alignment explanation
Indices: 19495--19549 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
19485 CAACAACTAA
19495 AGCCCAAAGTC-ACATGAACCAAATAAG
1 AGCCCAAAGTCAACATGAACCAAATAAG
*
19522 AGCCCAAAGTCAACATGAGCCAAATAAG
1 AGCCCAAAGTCAACATGAACCAAATAAG
19550 CAAATGGGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.47, C:0.25, G:0.16, T:0.11
Consensus pattern (28 bp):
AGCCCAAAGTCAACATGAACCAAATAAG
Found at i:39774 original size:21 final size:22
Alignment explanation
Indices: 39750--39791 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
39740 TTTGCCTCAT
*
39750 GCATTCATTCAT-CATGCCATG
1 GCATTCATTCATGCATCCCATG
39771 GCATTCATTCATGCATCCCAT
1 GCATTCATTCATGCATCCCAT
39792 TAAAGCCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.33
Consensus pattern (22 bp):
GCATTCATTCATGCATCCCATG
Done.