Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016588.1 Corchorus olitorius cultivar O-4 contig16621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3348
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Found at i:248 original size:11 final size:11
Alignment explanation
Indices: 232--265 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
222 AGGAGTAGGA
232 TCCTTCCTAGC
1 TCCTTCCTAGC
243 TCCTTCCTAGC
1 TCCTTCCTAGC
254 TCCTTCCTAGC
1 TCCTTCCTAGC
265 T
1 T
266 TTTCCTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.09, C:0.44, G:0.09, T:0.38
Consensus pattern (11 bp):
TCCTTCCTAGC
Found at i:928 original size:154 final size:154
Alignment explanation
Indices: 674--1009 Score: 564
Period size: 154 Copynumber: 2.2 Consensus size: 154
664 ATTCGTATCA
* *
674 TTATGGCCTAACTCTAATCATTTTGGTGAGATTAGTCCACTGAGAAGTTTTTAGTTCATTTGGAA
1 TTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGAGAAGTTTTTAGCTCATTTGGAA
* *
739 CACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAA
66 CACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACATTTTGAATCGTCTTCGATTGGGCAAA
* *
804 TCTCAATGCTTTTCGTTCCATTGT
131 CCTCAATGCTTTTCGTTACATTGT
* * *
828 TTATGGCTTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAA
1 TTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGAGAAGTTTTTAGCTCATTTGGAA
* *
893 CACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTGGGCAAC
66 CACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACATTTTGAATCGTCTTCGATTGGGCAAA
*
958 CCTCAATGCTTTTCTTTACATTGT
131 CCTCAATGCTTTTCGTTACATTGT
982 TTATGGCCTAACTATAATCATTTTGGTG
1 TTATGGCCTAACTATAATCATTTTGGTG
1010 TAGCTCATTT
Statistics
Matches: 169, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
154 169 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (154 bp):
TTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGAGAAGTTTTTAGCTCATTTGGAA
CACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACATTTTGAATCGTCTTCGATTGGGCAAA
CCTCAATGCTTTTCGTTACATTGT
Found at i:1113 original size:131 final size:131
Alignment explanation
Indices: 879--1140 Score: 461
Period size: 131 Copynumber: 2.0 Consensus size: 131
869 GTGAAGTTTT
879 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTC
* * *
944 TTCGATTGGGCAACCCTCAATGCTTTTCTTTACATTGTTTATGGCCTAACTATAATCATTTTGGT
66 TTCAATTGGGCAAACCTAAATGCTTTTCTTTACATTGTTTATGGCCTAACTATAATCATTTTGGT
1009 G
131 G
*
1010 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTC
* * *
1075 TTCAATTTGGCAAATCTAAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
66 TTCAATTGGGCAAACCTAAATGCTTTTCTTTACATTGTTTATGGCCTAACTATAATCATTTTGGT
1140 G
131 G
1141 AGATTAGTCC
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 124 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (131 bp):
TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTC
TTCAATTGGGCAAACCTAAATGCTTTTCTTTACATTGTTTATGGCCTAACTATAATCATTTTGGT
G
Found at i:1292 original size:154 final size:153
Alignment explanation
Indices: 1012--3348 Score: 3638
Period size: 154 Copynumber: 15.2 Consensus size: 153
1002 TTTTGGTGTA
1012 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* ** *
1077 CAATTTGGCAAATCTAAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
1142 GATTAGTCCACTGTGAAGGTTTTT
131 GATTAGTCCACTGTGAA-GTTTTT
1166 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* * *
1231 CGATATGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGTCTAACTTTAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
*
1296 GATTAGTCCACTGTGAAGTTATTA
131 GATTAGTCCACTGTGAAGTT-TTT
**
1320 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
*
1385 CGATTTGGCAACCCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
*
1450 GATTAGTCCACTATGAAGTTTCTT
131 GATTAGTCCACTGTGAAGTTT-TT
*
1474 AGCTCATTTGGAACACTTGTTATGTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
1 -GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
*
1539 TCGATTTGGCAAACCTCAATGCTTTTCTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
65 TCGATTTGGCAACCCTCAATGCTTTTC-TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
1604 GAGATTAGTCCACTGTGAAGTTTTT
129 GAGATTAGTCCACTGTGAAGTTTTT
* *
1629 GCTCATTTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* * *
1694 CGATTTGGCAACCCTCAATGCTTTTCTTTACATTGTTTATAGCCTAAATATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
** *
1759 GATTAGTCCACTGAAAAGTTCTTA
131 GATTAGTCCACTGTGAAGTT-TTT
* * * * * *
1783 GCTCATTTGCAACACTTGTTATTTTGGGCCTATC-AGGACCATTAATCACGTTTTGAATCATCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* ** *
1847 CAATTTGGCAAATCTCAATGCTTTTCGTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
*
1912 GATTAGTCCATTGTGAAGTTTTT
131 GATTAGTCCACTGTGAAGTTTTT
* * **
1935 AGCTCATTTGGAACACTTGTTATTTTGGGCCTATAGGTGCCCATTAGTTCCGTTTTGAATCGTCT
1 -GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
** *
2000 TCGATTTGGCAACCCTCAATGCTTTTCTTTATATTGTTTATGGCCTAACTATAATCATTTTGGTC
65 TCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
*
2065 AGATTAGTCCACTGTAAAGTTTTT
130 AGATTAGTCCACTGTGAAGTTTTT
* *
2089 AGCTCATTTGCAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCT
1 -GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
* **
2154 TCAATTTGGCAAATCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
65 TCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
2219 AGATTAGTCCACTGTGAAGGTTTTT
130 AGATTAGTCCACTGTGAA-GTTTTT
*
2244 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAATGACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* * * *
2309 CGATTTCGCAACCCTCATTGCTTTTCTTTTCATTGTTTATTGCCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
2374 GATTAGTCCACTGTGAAGTTTTTT
131 GATTAGTCCACTGTGAAG-TTTTT
*
2398 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
*
2463 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
* *
2528 GATTAGTGCA---TGAAGTTTTAA
131 GATTAGTCCACTGTGAAGTTTT-T
*
2549 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGATGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
*
2614 CGATTTGGCAACCCTCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
* *
2679 GATTAGTCCACTATGAAGTTCTTA
131 GATTAGTCCACTGTGAAGTT-TTT
*
2703 GCTCATTTGGAACACTTGTTATGTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* * ** * * *
2768 CGATTGGGCAAACCTTGATGCTTTTCTTTCCATTATCTATGGCCTAACTATAATAATTTTGGTCG
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-G
* * *
2833 ACATTAGTGCACTATGAAGTTTTT
130 AGATTAGTCCACTGTGAAGTTTTT
* * *
2857 AGCTCATTTAGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTGACGATTTGAATCGTCT
1 -GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
* *
2922 TCGATTTGGCAACTCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAATATAATCATTTTGGTG
65 TCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
2987 AGATTAGTCCACTGTGAAGTTTTT
130 AGATTAGTCCACTGTGAAGTTTTT
* * * **
3011 AGCTCATTTGGAACATTTGTTATTTTGGGCCTATAGGGGCCCATTAATTCCGTTTTGAATCGTCT
1 -GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
*
3076 TCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTTGTG
65 TCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
* * *
3141 AGATTAATCAACTGTGAAGTTCTTA
130 AGATTAGTCCACTGTGAAGTT-TTT
* *
3166 GCTCATTTGGAACACTTGTTATGTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* * * * *
3231 CGATTGGGCAAACCTTAATGCTTTTCTTTCCATTGTTTGTCGCCTAACTATAATCATTTTGGTGA
66 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
*
3296 GATTAGTCCACTATGAAGTTTTT
131 GATTAGTCCACTGTGAAGTTTTT
* *
3319 AGCTCATTTAGAACACTTTTTTATTTTGGG
1 -GCTCATTTGGAACAC-TTGTTATTTTGGG
Statistics
Matches: 1996, Mismatches: 168, Indels: 37
0.91 0.08 0.02
Matches are distributed among these distances:
150 4 0.00
151 140 0.07
152 2 0.00
153 192 0.10
154 1355 0.68
155 244 0.12
156 59 0.03
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (153 bp):
GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
GATTAGTCCACTGTGAAGTTTTT
Found at i:3161 original size:463 final size:462
Alignment explanation
Indices: 1010--3348 Score: 3749
Period size: 463 Copynumber: 5.1 Consensus size: 462
1000 CATTTTGGTG
1010 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
* ** *
1075 TTCAATTTGGCAAATCTAAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
66 TTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
1140 GAGATTAGTCCACTGTGAAGGTTTTT-GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG
131 GAGATTAGTCCACTGTGAA-GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG
*
1204 CCCATTAGTGACGTTTTGAATCGTCTTCGATATGGCAACCCTCAATGCTTTTCTTTCCATTGTTT
195 CCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTT
* * *
1269 ATGGTCTAACTTTAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTATTAGCTCATTTGGAACA
260 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGCTCATTTGGAACA
*
1334 CTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC-CGTTTTGAATCGTCTTCGATTTGGCAACC
325 CTTGTTATTTTGGGCCTATCGGGGCCCATTAG-TCACGTTTTGAATCGTCTTCGATTTGGCAAAC
* *
1398 CTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
389 CTTAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
1463 TGAAGTTTCT
454 TGAAGTTT-T
*
1473 TAGCTCATTTGGAACACTTGTTATGTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
*
1538 TTCGATTTGGCAAACCTCAATGCTTTTCTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
66 TTCGATTTGGCAACCCTCAATGCTTTTC-TTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
*
1603 TGAGATTAGTCCACTGTGAAGTTTTT-GCTCATTTGGAACACTTCTTATTTTGGGCCTATCGGGG
130 TGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG
* *
1667 CCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTACATTGTTT
195 CCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTT
* * ** *
1732 ATAGCCTAAATATAATCATTTTGGTGAGATTAGTCCACTGAAAAGTTCTTAGCTCATTTGCAACA
260 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGCTCATTTGGAACA
* * * * * *
1797 CTTGTTATTTTGGGCCTATC-AGGACCATTAATCACGTTTTGAATCATCTTCAATTTGGCAAATC
325 CTTGTTATTTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTTCGATTTGGCAAACC
* * * *
1861 TCAATGCTTTTCGTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGT
390 TTAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTAT
1926 GAAGTTTT
455 GAAGTTTT
* * **
1934 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATAGGTGCCCATTAGTTCCGTTTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
**
1999 TTCGATTTGGCAACCCTCAATGCTTTTCTTTATATTGTTTATGGCCTAACTATAATCATTTTGGT
66 TTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
* * * *
2064 CAGATTAGTCCACTGTAAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTATCGGGGA
131 GAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
* **
2129 CCATTAGTGACGTTTTGAATCGTCTTCAATTTGGCAAATCTCAATGCTTTTCTTTCCATTGTTTA
196 CCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTA
*
2194 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGGTT-TTTGCTCATTTGGAACA
261 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA-GTTCTTAGCTCATTTGGAACA
* * * *
2258 CTTGTTATTTTGGGCCTATCGGGGCCCATTAATGACGTTTTGAATCGTCTTCGATTTCGCAACCC
325 CTTGTTATTTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTTCGATTTGGCAAACC
* * * * *
2323 TCATTGCTTTTCTTTTCATTGTTTATTGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
390 TTAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTAT
2388 GAAGTTTT
455 GAAGTTTT
* *
2396 TTGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
*
2461 TTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGTCTAACTATAATCATTTTGGT
66 TTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
* *
2526 GAGATTAGTGCA---TGAAGTTTTAAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
131 GAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
* *
2588 CCATTAGTGATGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCAATGTTTA
196 CCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTA
*
2653 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGGAACAC
261 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGCTCATTTGGAACAC
* * *
2718 TTGTTATGTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTGGGCAAACCT
326 TTGTTATTTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTTCGATTTGGCAAACCT
* * * * * *
2783 TGATGCTTTTCTTTCCATTATCTATGGCCTAACTATAATAATTTTGGTCGACATTAGTGCACTAT
391 TAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-GAGATTAGTCCACTAT
2848 GAAGTTTT
455 GAAGTTTT
* * *
2856 TAGCTCATTTAGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTGACGATTTGAATCGTC
1 TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
* *
2921 TTCGATTTGGCAACTCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAATATAATCATTTTGGT
66 TTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
* *
2986 GAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGCCTATAGGGGC
131 GAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
* **
3051 CCATTAATTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTA
196 CCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTA
* * *
3116 TGGCCTAACTATAATCATTTTTGTGAGATTAATCAACTGTGAAGTTCTTAGCTCATTTGGAACAC
261 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGCTCATTTGGAACAC
* *
3181 TTGTTATGTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTTCGATTGGGCAAACCT
326 TTGTTATTTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTTCGATTTGGCAAACCT
* *
3246 TAATGCTTTTCTTTCCATTGTTTGTCGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATG
391 TAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATG
3311 AAGTTTT
456 AAGTTTT
* *
3318 TAGCTCATTTAGAACACTTTTTTATTTTGGG
1 TAGCTCATTTGGAACAC-TTGTTATTTTGGG
Statistics
Matches: 1733, Mismatches: 132, Indels: 22
0.92 0.07 0.01
Matches are distributed among these distances:
458 3 0.00
459 265 0.15
460 212 0.12
461 260 0.15
462 379 0.22
463 558 0.32
464 56 0.03
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (462 bp):
TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC
TTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
GAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
CCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTA
TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGCTCATTTGGAACAC
TTGTTATTTTGGGCCTATCGGGGCCCATTAGTCACGTTTTGAATCGTCTTCGATTTGGCAAACCT
TAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATG
AAGTTTT
Done.