Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016593.1 Corchorus olitorius cultivar O-4 contig16626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63767

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1826--2068
129
1.8
134
85
7
343
36
10
1
51
1.47
10640--10673
2
17.0
2
100
0
68
50
0
0
50
1.00
14059--14107
21
2.5
20
76
6
55
48
8
8
34
1.62
22634--22691
19
2.9
20
79
5
64
39
12
20
27
1.88
29160--29201
6
7.0
6
97
0
66
0
28
50
21
1.49
34586--34666
39
2.0
40
90
2
128
50
9
3
35
1.53
34657--34702
24
2.0
23
91
4
74
30
4
8
56
1.49
34773--35182
204
2.0
203
92
1
680
35
11
9
44
1.72
35676--35745
36
1.9
36
91
0
113
60
8
10
21
1.55
37006--37115
58
1.9
58
87
7
161
33
20
13
32
1.91
48441--48474
12
2.6
13
90
9
52
55
0
17
26
1.42
48735--48763
7
4.1
7
100
0
58
27
0
72
0
0.85
58385--58417
17
2.1
16
88
11
50
12
21
12
54
1.69

Tables:   1

The End!