Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016595.1 Corchorus olitorius cultivar O-4 contig16628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49608
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:1730 original size:45 final size:45
Alignment explanation
Indices: 1680--1827 Score: 269
Period size: 45 Copynumber: 3.3 Consensus size: 45
1670 AGTGGAAAGC
1680 ACAATTCATGGGGAGATAACAGGTCTAGGGATTGGAATACTGGCA
1 ACAATTCATGGGGAGATAACAGGTCTAGGGATTGGAATACTGGCA
*
1725 ACAATTCATGGGGAGATAACAGGTCTAGGGATTGGAATACTGGTA
1 ACAATTCATGGGGAGATAACAGGTCTAGGGATTGGAATACTGGCA
* *
1770 ACAATTCATGGGGAGATAACAGGTTTAGGGATTGGTATACTGGCA
1 ACAATTCATGGGGAGATAACAGGTCTAGGGATTGGAATACTGGCA
1815 ACAATTCATGGGG
1 ACAATTCATGGGG
1828 CCATAGCTGT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 99 1.00
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.24
Consensus pattern (45 bp):
ACAATTCATGGGGAGATAACAGGTCTAGGGATTGGAATACTGGCA
Found at i:13687 original size:28 final size:28
Alignment explanation
Indices: 13647--13710 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
13637 TGACAAGGTT
13647 CAGGCTTCTTGGAATAATTCCTGTTTTG
1 CAGGCTTCTTGGAATAATTCCTGTTTTG
13675 CAGGCTTCTTGGAATAATTCCTGTTTTG
1 CAGGCTTCTTGGAATAATTCCTGTTTTG
13703 CAGGCTTC
1 CAGGCTTC
13711 ACTTTTCTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (28 bp):
CAGGCTTCTTGGAATAATTCCTGTTTTG
Found at i:25450 original size:25 final size:25
Alignment explanation
Indices: 25403--25453 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
25393 TATTTTGAAC
*
25403 TTATTATTTATTATTTAAAATATAT
1 TTATTATTTATTATATAAAATATAT
*
25428 TTATTATTTATT-TAATAATATATAT
1 TTATTATTTATTAT-ATAAAATATAT
25453 T
1 T
25454 ATATCTAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATTATTTATTATATAAAATATAT
Found at i:25453 original size:21 final size:21
Alignment explanation
Indices: 25373--25455 Score: 73
Period size: 22 Copynumber: 3.8 Consensus size: 21
25363 CGTTTAGTAA
25373 TTAAATATATATTATTTATTTATT
1 TTAAA-ATATATTA-TTATTTA-T
* *
25397 TTGAACT-TATTATT-TATTAT
1 TTAAAATATATTATTAT-TTAT
25417 TTAAAATATATTTATTATTTAT
1 TTAAAATATA-TTATTATTTAT
25439 TTAATAATATA-TATTAT
1 TTAA-AATATATTATTAT
25456 ATCTAAGATA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
20 7 0.14
21 13 0.26
22 18 0.36
23 8 0.16
24 4 0.08
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (21 bp):
TTAAAATATATTATTATTTAT
Found at i:28710 original size:74 final size:74
Alignment explanation
Indices: 28580--28807 Score: 363
Period size: 74 Copynumber: 3.1 Consensus size: 74
28570 AAAACAAATA
**
28580 CACATATTTTTACTAATGTTTCATAT-GGATCAA-TGGACACTTAATATGGTTTAATCCAATTGA
1 CACA-ATTTTTACTAATGTTTCATATGGGCCCAATTGGACACTTAATATGGTTTAATCCAATTGA
28643 GGTGGACACT
65 GGTGGACACT
*
28653 CACAATTTTTACTAATGTTTCATATGGGCCCAATTGGACACTTAACATGGTTTAATCCAATTGAG
1 CACAATTTTTACTAATGTTTCATATGGGCCCAATTGGACACTTAATATGGTTTAATCCAATTGAG
28718 GTGGACACT
66 GTGGACACT
* *
28727 CACAATTTTTACTAATGTTTCATATGGGCCCAATTGGATACTTAATATGGTTTAATTCAATTG-G
1 CACAATTTTTACTAATGTTTCATATGGGCCCAATTGGACACTTAATATGGTTTAATCCAATTGAG
*
28791 AGTGGGCACT
66 -GTGGACACT
28801 CACAATT
1 CACAATT
28808 ATTTTGGGTG
Statistics
Matches: 145, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
72 21 0.14
73 10 0.07
74 114 0.79
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (74 bp):
CACAATTTTTACTAATGTTTCATATGGGCCCAATTGGACACTTAATATGGTTTAATCCAATTGAG
GTGGACACT
Found at i:31019 original size:27 final size:27
Alignment explanation
Indices: 30974--31025 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
30964 GAGGGAGGGA
* ** *
30974 GGAAATTAGGAAATGAAAAGGAAAACT
1 GGAAAGTAGGAAACCAAAAGAAAAACT
31001 GGAAAGTAGGAAACCAAAAGAAAAA
1 GGAAAGTAGGAAACCAAAAGAAAAA
31026 AGCGCAAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.60, C:0.06, G:0.25, T:0.10
Consensus pattern (27 bp):
GGAAAGTAGGAAACCAAAAGAAAAACT
Found at i:31716 original size:21 final size:21
Alignment explanation
Indices: 31692--31748 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
31682 AGAATGAGAC
* *
31692 AAATTAGTCATTAAACTTTCA
1 AAATTACTAATTAAACTTTCA
31713 AAATTACTAATTAAACTTTCA
1 AAATTACTAATTAAACTTTCA
31734 AAATTACTAATTAAA
1 AAATTACTAATTAAA
31749 AGCACTGAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTACTAATTAAACTTTCA
Found at i:33746 original size:3 final size:3
Alignment explanation
Indices: 33733--33764 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
33723 TATATATATA
33733 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
33765 ATATAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:37940 original size:22 final size:22
Alignment explanation
Indices: 37915--38040 Score: 78
Period size: 22 Copynumber: 5.7 Consensus size: 22
37905 AAAGGAAGGT
* *
37915 TTATTAAAATTTCATAGTTAGC
1 TTATCAAAATTTCATAGTTAGA
* * *
37937 TTATCAAAGTTTCATA-TGGAGT
1 TTATCAAAATTTCATAGT-TAGA
* * *
37959 TTATCACAATTTCATAGGTAAA
1 TTATCAAAATTTCATAGTTAGA
* *
37981 TTATCAAAATTTCATAGCGT-GG
1 TTATCAAAATTTCATAG-TTAGA
* * * *
38003 TTATCAAATTTTAATTGGATAG-
1 TTATCAAAATTTCA-TAGTTAGA
38025 TTATCAAAATTTCATA
1 TTATCAAAATTTCATA
38041 AAAATATTCA
Statistics
Matches: 79, Mismatches: 20, Indels: 11
0.72 0.18 0.10
Matches are distributed among these distances:
21 2 0.03
22 72 0.91
23 5 0.06
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTTAGA
Found at i:37970 original size:44 final size:44
Alignment explanation
Indices: 37913--38040 Score: 116
Period size: 44 Copynumber: 2.9 Consensus size: 44
37903 TTAAAGGAAG
* * ** *
37913 GTTTATTAAAATTTCATAGTTAGCTTATCAAAGTTTCATATGGA
1 GTTTATCAAAATTTCATAGGTAAATTATCAAAATTTCATATGGA
* *
37957 GTTTATCACAATTTCATAGGTAAATTATCAAAATTTCATA-GCGT
1 GTTTATCAAAATTTCATAGGTAAATTATCAAAATTTCATATG-GA
* * * * *
38001 GGTTATCAAATTTTAATTGG-ATAGTTATCAAAATTTCATA
1 GTTTATCAAAATTTCATAGGTA-AATTATCAAAATTTCATA
38041 AAAATATTCA
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.03
44 67 0.97
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.41
Consensus pattern (44 bp):
GTTTATCAAAATTTCATAGGTAAATTATCAAAATTTCATATGGA
Found at i:38007 original size:66 final size:65
Alignment explanation
Indices: 37915--38040 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 65
37905 AAAGGAAGGT
* * * *
37915 TTATTAAAATTTCATAGTTAGCTTATCAAAGTTTCATATGGAGT-TTATCACAATTTCATAGGTA
1 TTATCAAAATTTCATAGGTAGCTTATCAAAGTTTAAT-TGGA-TATTATCAAAATTTCATAGGTA
37979 AA
64 AA
* *
37981 TTATCAAAATTTCATAGCGT-GGTTATCAAATTTTAATTGGATAGTTATCAAAATTTCATA
1 TTATCAAAATTTCATAG-GTAGCTTATCAAAGTTTAATTGGATA-TTATCAAAATTTCATA
38041 AAAATATTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
64 1 0.02
65 4 0.08
66 45 0.88
67 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (65 bp):
TTATCAAAATTTCATAGGTAGCTTATCAAAGTTTAATTGGATATTATCAAAATTTCATAGGTAAA
Found at i:38106 original size:2 final size:2
Alignment explanation
Indices: 38099--38145 Score: 57
Period size: 2 Copynumber: 25.5 Consensus size: 2
38089 CTAAAACTAG
*
38099 TA TA TA TA TA TA TA TA TA TA TC TA TA -A TA T- TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38138 TA T- TA TA T
1 TA TA TA TA T
38146 CATCTATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
1 4 0.10
2 35 0.90
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:47511 original size:2 final size:2
Alignment explanation
Indices: 47506--47831 Score: 516
Period size: 2 Copynumber: 165.0 Consensus size: 2
47496 AAGAAGACAT
* *
47506 GA GA GA GA -A GA GG GA GA GA GA GA GA G- GA G- GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
47545 GA GA GA GA G- GA GG GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47586 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47628 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47670 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47712 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
47754 GA GA GA GA GA GA GA GG GA GA GA GA GG GA GA GA CA AA GA GA CA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
47796 GA GA GA AA GA GA GA GA GG GA GA AA CA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47832 TAGGGGGTTT
Statistics
Matches: 298, Mismatches: 22, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
1 4 0.01
2 294 0.99
ACGTcount: A:0.49, C:0.01, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:47864 original size:19 final size:19
Alignment explanation
Indices: 47840--47879 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
47830 GATAGGGGGT
*
47840 TTAGGGTAATGCTTTAGGG
1 TTAGGGTAAGGCTTTAGGG
* *
47859 TTAGGGTTAGGGTTTAGGG
1 TTAGGGTAAGGCTTTAGGG
47878 TT
1 TT
47880 TCGGGTCAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.17, C:0.03, G:0.40, T:0.40
Consensus pattern (19 bp):
TTAGGGTAAGGCTTTAGGG
Found at i:48222 original size:40 final size:40
Alignment explanation
Indices: 48167--48247 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
48157 GCGTTGAATT
* *
48167 ATACATATTCTATTAGTTTTTTGGTC-AAAGATTGTGGAAA
1 ATACATATTCTATTAGTGTTTTGG-CGAAAAATTGTGGAAA
48207 ATACATATTCTATTAGTGTTTTGGCGAAAAATTGTGGAAA
1 ATACATATTCTATTAGTGTTTTGGCGAAAAATTGTGGAAA
48247 A
1 A
48248 AATCTTTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.40
Consensus pattern (40 bp):
ATACATATTCTATTAGTGTTTTGGCGAAAAATTGTGGAAA
Found at i:48819 original size:335 final size:328
Alignment explanation
Indices: 48207--49153 Score: 1343
Period size: 335 Copynumber: 2.9 Consensus size: 328
48197 ATTGTGGAAA
* * *
48207 ATACATATTCTATTAGTGTTTTGGCGAAAAATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAA
1 ATACATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAA
* * *
48272 AATTTGAGCCAAAATCGTGTA-TAAATCATCACGGGTTTTGGCTAAAAACGCGTTCCGGGGCCT-
66 AATTTTAGCCAAAATCGTTTACT-AA--ATCAC-GGTTTTGGCTAAAAACGCGTTCCGGGCCCTC
* * *
48335 GACTCAGTTTTTAATTATTTATGGGCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAAT
127 G-CTCAGTTTTTAATGATTTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAAT
* *
48400 CTCAGCCAAATTGAATTTAAGGATTTGATTTTACGAGCAACAAAATCATGTTTCGATTTAATCAG
191 CTCAGCCAAATTG-ATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAG
48465 AAATTAATTCGGAAACATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTG
255 AAATTAATTCGGAAACATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAAT-TTTTTG
48530 GCATTGAATT
319 GCATTGAATT
* *
48540 ATATATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAA-CTTTCGGATCAATTTTTGCAA
1 ATACATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAA
48604 AATTTTAGCCAAAATCGTTTACGTTACAATCACGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCT
66 AATTTTAGCCAAAATCGTTTAC--TA-AATCACGG-TTTTGGCTAAAAACGCGTT-CCGGGCCCT
* * * * *
48669 CGCTTCAGTTTTCAATGATTTTTGGCCCCGTGACTCTTTTACATATCTATATTCATCTAATCAAA
126 CGC-TCAGTTTTTAATGATTTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAA
* *
48734 TCTCAGCCAAATTCGATTTAAGGATTTAATTTTACAAGCATCAGAATCATGTTTCGATTTAATCA
190 TCTCAGCCAAATT-GATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCA
* *
48799 GATATTAATTCAGAAACATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTG
254 GAAATTAATTCGGAAACATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTG
48864 GCATTGAATT
319 GCATTGAATT
* * *
48874 ATACATATTTTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAATCTTTTGGGT-AAATTTTGCAA
1 ATACATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAA
* * * * * *
48938 AATTTTAGCCAAAATTGTTTACT-AA-C-CAGTTTTAGATAAAAATGCGTTTCGGAGCCC-CAGC
66 AATTTTAGCCAAAATCGTTTACTAAATCACGGTTTTGGCTAAAAACGCGTTCCGG-GCCCTC-GC
* * * * *
48999 TCAGTTTTTAATGATTTTTGACCCAGAGACTCCTTGATATATCTATATTCATCTAACCAAATATA
129 TCAGTTTTTAATGATTTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTC
*
49064 AGCCAAATTGGATTTAAGGATTTGATTTTACGATCATCAGAATCATGTTTCGATTTAATCAGAAA
194 AGCCAAATT-GATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAA
*
49129 TTAATTCGGAAAGATATAGGAAAAT
258 TTAATTCGGAAACATATAGGAAAAT
49154 ACACGTGATG
Statistics
Matches: 552, Mismatches: 50, Indels: 31
0.87 0.08 0.05
Matches are distributed among these distances:
326 142 0.26
327 22 0.04
328 2 0.00
329 1 0.00
330 2 0.00
332 42 0.08
333 63 0.11
334 98 0.18
335 179 0.32
336 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (328 bp):
ATACATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAA
AATTTTAGCCAAAATCGTTTACTAAATCACGGTTTTGGCTAAAAACGCGTTCCGGGCCCTCGCTC
AGTTTTTAATGATTTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAG
CCAAATTGATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTA
ATTCGGAAACATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTGGCATTGA
ATT
Found at i:49327 original size:7 final size:7
Alignment explanation
Indices: 49310--49608 Score: 496
Period size: 7 Copynumber: 44.3 Consensus size: 7
49300 CGAAATCGTG
49310 TAGGG-T
1 TAGGGTT
49316 TAGGGTT
1 TAGGGTT
49323 TAGGG-T
1 TAGGGTT
49329 TAGGG-T
1 TAGGGTT
49335 TAGGGTT
1 TAGGGTT
49342 TAGGG-T
1 TAGGGTT
49348 TAGGGTT
1 TAGGGTT
49355 TAGGGTT
1 TAGGGTT
*
49362 AAGGG-T
1 TAGGGTT
49368 TAGGGTT
1 TAGGGTT
49375 TAGGGTT
1 TAGGGTT
49382 TAGGG-T
1 TAGGGTT
49388 TAGGGTT
1 TAGGGTT
49395 TAGGGGTT
1 TA-GGGTT
49403 TAGGGTT
1 TAGGGTT
49410 TAGGG-T
1 TAGGGTT
49416 TAGGGTT
1 TAGGGTT
49423 TAGGGTT
1 TAGGGTT
49430 TAGGG-T
1 TAGGGTT
49436 TAGGGTT
1 TAGGGTT
49443 TAGGG-T
1 TAGGGTT
49449 TAGGG-T
1 TAGGGTT
49455 TAGGGTT
1 TAGGGTT
49462 TAGGGTT
1 TAGGGTT
49469 TAGGGTT
1 TAGGGTT
49476 TAGGGTT
1 TAGGGTT
49483 TAGGGTT
1 TAGGGTT
49490 TAGGGTT
1 TAGGGTT
49497 TAGGGTT
1 TAGGGTT
49504 TAGGGTT
1 TAGGGTT
49511 TAGGGTT
1 TAGGGTT
49518 TAGGGTT
1 TAGGGTT
49525 TAGGGTT
1 TAGGGTT
49532 TAGGGTT
1 TAGGGTT
49539 TAGGGTT
1 TAGGGTT
49546 TAGGGTT
1 TAGGGTT
49553 TAGGG-T
1 TAGGGTT
49559 TAGGG-T
1 TAGGGTT
49565 TAGGGTT
1 TAGGGTT
49572 TAGGGTT
1 TAGGGTT
49579 TAGGGTT
1 TAGGGTT
49586 TAGGGTT
1 TAGGGTT
49593 TAGGGTT
1 TAGGGTT
49600 TAGGGTT
1 TAGGGTT
49607 TA
1 TA
Statistics
Matches: 281, Mismatches: 2, Indels: 19
0.93 0.01 0.06
Matches are distributed among these distances:
6 70 0.25
7 204 0.73
8 7 0.02
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.40
Consensus pattern (7 bp):
TAGGGTT
Done.