Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016597.1 Corchorus olitorius cultivar O-4 contig16630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64050

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6029--6203
92
1.9
90
85
6
239
41
17
17
22
1.90
7549--7582
12
2.7
13
86
9
52
2
20
0
76
0.92
23912--24130
22
10.0
22
74
11
164
40
17
11
30
1.85
23911--24123
43
4.9
44
76
8
195
40
16
11
30
1.85
23912--24087
65
2.7
66
83
3
196
42
15
11
30
1.83
23911--24123
87
2.5
86
80
9
220
40
16
11
30
1.85
47722--47786
31
2.2
29
86
10
87
27
23
13
35
1.93
48316--48350
2
18.0
2
94
5
63
51
0
0
48
1.00
48316--48348
17
1.9
17
100
0
66
51
0
0
48
1.00
57644--57683
21
1.9
21
94
0
71
25
37
22
15
1.93
57666--57787
50
2.4
50
94
0
208
32
23
24
18
1.97
57766--57808
22
2.0
22
90
0
68
23
32
23
20
1.98
58896--58980
25
3.4
25
85
0
98
18
27
32
21
1.97
61569--61608
15
2.6
15
84
4
53
30
5
20
45
1.72
62266--62312
25
1.9
24
95
4
85
29
4
8
57
1.48
62705--62754
3
16.7
3
100
0
100
66
0
0
34
0.92
63344--63414
36
1.9
36
86
8
99
61
8
8
21
1.50

Tables:   1

The End!