genome.fa.s16600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016600.1 Corchorus olitorius cultivar O-4 contig16633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79441

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54--704	289	2.3	289	95	1	1153	23	20	21	34	1.96
343--2200	361	5.0	361	70	13	1476	24	20	21	33	1.97
632--776	72	2.0	72	97	0	272	13	23	17	44	1.85
704--1324	289	2.1	289	98	0	1197	24	20	22	32	1.98
1--1324	650	2.0	648	96	0	2427	23	20	21	34	1.97
1127--1522	198	2.0	198	94	0	702	27	21	26	25	2.00
838--1811	487	2.0	487	96	0	1779	25	21	23	29	1.99
1769--1911	70	2.0	71	90	2	225	13	23	18	44	1.85
1480--2188	359	2.0	360	96	1	1307	23	20	21	34	1.96
1839--2454	290	2.1	289	96	0	1126	24	20	22	33	1.97
2237--2670	216	2.0	217	94	0	762	27	20	24	26	1.99
2454--2950	258	1.9	258	94	0	877	26	20	23	29	1.98
3155--3180	13	2.0	13	100	0	52	23	15	30	30	1.95
3862--3964	51	2.0	51	92	3	172	24	11	18	45	1.82
5908--5942	18	1.9	18	88	0	52	17	37	17	28	1.92
8874--8898	11	2.3	11	100	0	50	28	20	28	24	1.99
9545--9585	21	1.9	21	90	5	64	2	7	7	82	0.91
9632--9777	74	2.0	75	98	1	285	17	6	15	59	1.57
10246--10270	13	1.9	13	100	0	50	24	8	0	68	1.16
15884--16017	26	4.8	26	76	11	124	20	20	2	56	1.52
16122--16160	9	4.3	9	81	12	53	15	17	0	66	1.25
16188--16287	22	4.6	22	79	9	125	19	18	7	56	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16238--16269	15	2.1	15	94	0	55	15	18	6	59	1.57
16238--16420	7	25.9	7	67	20	60	18	23	4	53	1.64
16246--16481	63	3.8	63	81	11	235	19	22	4	52	1.64
16189--16469	21	13.6	20	75	14	186	20	21	5	52	1.67
16401--16453	27	2.0	27	85	7	72	24	20	3	50	1.64
17188--17217	6	4.8	6	95	4	51	50	16	0	33	1.46
18191--18239	23	2.1	23	82	14	57	4	16	2	77	1.01
20703--20749	22	2.1	22	100	0	94	42	8	25	23	1.82
21829--21885	13	4.2	14	73	20	50	14	3	1	80	0.92
21410--22322	474	1.9	471	89	2	1418	24	16	21	36	1.94
25351--25443	26	3.5	26	88	5	143	12	19	27	39	1.88
25351--25443	27	3.5	26	89	5	143	12	19	27	39	1.88
29236--29769	47	11.4	47	94	0	919	50	4	16	29	1.64
32794--32825	2	16.0	2	93	0	55	50	46	3	0	1.17
32825--32857	2	16.5	2	100	0	66	51	0	0	48	1.00
35378--35424	22	2.1	22	84	7	60	61	2	12	23	1.42
35521--35582	31	2.0	31	84	6	81	40	3	24	32	1.71
36957--37156	35	5.6	34	77	15	197	29	14	16	40	1.88
36957--37156	73	2.8	71	83	11	225	29	14	16	40	1.88
41362--41409	24	2.0	24	95	0	87	31	20	25	22	1.98
49737--49880	63	2.2	66	86	6	204	38	9	17	35	1.81
54981--55031	19	2.7	19	77	14	61	50	1	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55241--55279	20	1.9	21	89	5	62	53	10	10	25	1.66
55245--55412	44	3.9	43	81	4	153	39	8	12	39	1.75
55287--55412	22	5.8	22	72	3	94	35	8	12	42	1.74
57856--57880	13	1.9	13	100	0	50	0	44	0	56	0.99
67210--67257	23	2.2	21	85	10	62	33	20	18	27	1.96
67439--67541	51	2.0	51	83	3	127	25	20	13	40	1.89
69126--69168	19	2.3	18	84	11	52	48	0	39	11	1.40
72704--72733	15	2.0	15	93	0	51	43	0	0	56	0.99
72724--72756	15	2.2	15	100	0	66	39	0	18	42	1.50
72701--72734	2	17.5	2	87	6	52	47	0	0	52	1.00

Tables:   1

The End!