genome.fa.s16607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016607.1 Corchorus olitorius cultivar O-4 contig16640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85115

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111--141	7	4.6	7	92	8	55	41	41	0	16	1.48
111--141	13	2.3	14	94	5	55	41	41	0	16	1.48
350--405	3	18.3	3	92	3	94	33	1	1	62	1.16
1150--1174	13	1.9	13	100	0	50	24	8	28	40	1.83
1872--1942	37	1.9	37	100	0	142	46	5	21	26	1.73
2146--2213	32	2.1	32	88	0	100	17	22	27	32	1.96
6145--6232	31	3.0	29	79	8	97	37	7	15	38	1.77
6996--7125	52	2.5	52	89	2	199	39	14	16	30	1.88
10908--11731	8	108.9	8	66	18	247	46	6	19	27	1.73
10998--11176	82	2.2	78	85	4	232	45	10	20	24	1.81
11126--11213	36	2.4	36	81	7	99	44	6	25	23	1.78
11182--11931	22	33.6	22	75	10	605	45	6	20	28	1.75
11182--11661	89	5.4	87	84	7	549	46	5	19	28	1.73
11194--11661	111	4.2	110	87	4	595	46	5	19	28	1.73
11182--11728	288	1.9	288	89	5	845	46	5	19	29	1.71
11808--11932	8	16.9	8	69	21	60	45	3	23	28	1.68
11876--11931	14	3.9	14	84	13	69	44	1	25	28	1.64
13561--13598	19	2.1	19	90	5	60	23	5	5	65	1.34
18260--18389	52	2.5	52	93	2	217	37	15	18	28	1.91
20714--20975	130	2.0	130	97	0	497	36	16	7	39	1.76
25348--25436	29	3.1	28	72	13	65	49	23	10	16	1.76
34648--34707	31	2.0	31	87	12	90	36	25	10	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34665--34719	29	1.9	28	85	3	74	40	20	9	30	1.83
41559--41634	31	2.5	31	88	0	107	36	14	22	26	1.92
41613--41685	29	2.4	31	86	6	105	30	8	28	32	1.86
43087--43115	15	1.9	15	100	0	58	17	6	0	75	1.01
44654--44840	91	2.0	92	86	6	261	26	16	21	35	1.94
51335--51400	32	2.1	32	88	0	96	34	19	15	30	1.93
52683--52728	6	7.7	6	100	0	92	32	0	32	34	1.58
53419--53483	32	2.0	32	100	0	130	21	26	15	36	1.93
58335--58550	70	3.2	69	86	5	298	50	18	13	16	1.78
62049--62183	49	2.8	49	80	8	136	25	15	7	51	1.70
63705--63738	2	16.5	2	87	6	50	50	2	0	47	1.16
64744--64869	45	2.8	45	90	2	200	33	5	21	39	1.77
74820--74858	21	1.9	21	89	5	62	33	38	0	28	1.57
75325--75360	18	2.1	17	89	5	54	63	2	33	0	1.08
75416--75444	1	29.0	1	100	0	58	0	0	0	100	0.00
76071--76096	13	2.0	13	100	0	52	46	0	7	46	1.31
77518--77584	29	2.3	30	84	2	82	31	13	20	34	1.92
79457--79501	21	2.1	21	87	0	63	31	31	22	15	1.95
83670--83769	4	25.0	4	97	0	191	49	25	1	25	1.57
83767--83796	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!