genome.fa.s16608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016608.1 Corchorus olitorius cultivar O-4 contig16641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85055

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1512--1835	41	7.9	41	86	4	402	29	13	19	37	1.90
1516--1835	126	2.6	123	88	3	446	29	13	19	37	1.91
3113--3139	2	13.5	2	100	0	54	51	0	0	48	1.00
3199--3396	22	9.1	22	70	9	97	35	16	9	38	1.82
5870--5905	2	19.5	2	83	16	51	55	0	0	44	0.99
6541--6601	27	2.3	26	83	16	72	45	1	8	44	1.43
6766--7925	22	53.4	21	66	16	281	34	16	9	39	1.81
6938--7000	23	2.8	22	80	2	63	39	15	12	31	1.85
7082--7150	23	3.0	23	79	12	79	36	17	8	37	1.81
7430--7594	86	1.9	86	82	9	210	35	12	10	41	1.77
7675--7780	20	5.2	20	73	10	90	29	14	11	45	1.79
7678--7741	21	3.1	20	80	6	74	25	10	14	50	1.75
7930--8161	22	10.5	22	71	14	138	37	15	9	37	1.81
7934--8117	68	2.8	63	80	10	188	38	16	9	35	1.82
8327--8366	20	2.0	20	85	9	55	67	2	2	27	1.16
8379--8719	166	2.0	172	84	7	455	43	9	12	35	1.73
9421--9445	2	12.5	2	100	0	50	48	0	0	52	1.00
9896--10110	108	2.0	109	91	2	353	32	9	13	45	1.76
10749--11902	22	53.8	21	66	17	286	35	16	9	37	1.82
10731--10866	44	3.0	44	69	15	116	30	13	8	47	1.73
11079--11231	60	2.5	62	79	14	169	34	16	7	41	1.76
12071--12109	20	2.0	20	85	10	53	64	2	5	28	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20183--20211	15	1.9	15	100	0	58	55	0	3	41	1.17
20386--20450	31	2.0	33	88	8	98	27	6	7	58	1.50
20920--20979	16	3.8	15	69	18	50	41	36	13	8	1.74
22596--22774	93	1.9	93	80	5	211	42	13	8	35	1.74
26865--26904	16	2.5	16	91	0	62	7	10	2	80	1.00
30591--30635	21	2.1	21	84	8	56	31	24	0	44	1.54
31916--31945	12	2.4	13	88	11	53	66	13	6	13	1.43
35787--35938	76	2.0	76	81	2	180	25	29	26	17	1.98
38184--38222	19	2.1	19	86	13	55	0	28	2	69	1.02
39240--39613	39	10.2	39	74	12	217	50	14	14	20	1.78
39429--39525	31	3.2	31	85	2	142	51	13	15	19	1.76
39493--39613	38	3.2	39	79	3	138	52	14	14	18	1.74
39783--40397	170	3.6	170	89	0	876	33	17	20	29	1.95
40490--40643	69	2.2	69	77	2	166	31	16	25	27	1.96
40796--40983	35	5.3	35	77	4	182	40	25	19	14	1.90
42241--42285	8	5.2	8	80	15	54	13	0	15	71	1.15
42236--42286	18	2.9	18	80	13	70	13	0	15	70	1.17
42231--42292	30	2.1	29	82	11	72	14	0	14	70	1.16
42577--42626	13	3.6	14	75	22	52	44	10	8	38	1.68
42587--42622	13	2.8	13	95	0	63	44	2	8	44	1.48
42679--42717	9	4.4	9	80	6	53	12	12	0	74	1.08
44393--44428	19	1.9	18	88	5	54	41	8	22	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48669--48699	16	1.9	16	93	0	53	12	12	3	70	1.27
51060--51098	19	2.1	19	86	13	55	0	28	2	69	1.02
81781--81850	30	2.4	30	90	2	106	15	30	12	41	1.85
81875--81968	32	2.9	32	91	0	152	25	22	28	23	1.99

Tables:   1

The End!