Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016613.1 Corchorus olitorius cultivar O-4 contig16646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1948
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:299 original size:25 final size:24

Alignment explanation


    Indices: 263--309  Score: 60
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        253 TCCTTCTATT

                                    
        263 CATCTATCATC-AAGCTTTTCATC
          1 CATCTATCATCAAAGCTTTTCATC

                             *      
        286 CATCTCATCCATCAAAGTTTTTCA
          1 CATCT-AT-CATCAAAGCTTTTCA

        310 AATTTTCTAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  23    5  0.25
  24    2  0.10
  25    4  0.20
  26    9  0.45

ACGTcount: A:0.28, C:0.30, G:0.04, T:0.38


Consensus pattern (24 bp):   
CATCTATCATCAAAGCTTTTCATC
Done.