Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016616.1 Corchorus olitorius cultivar O-4 contig16649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49651

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53--90
2
19.0
2
94
0
67
47
0
0
52
1.00
2903--3282
120
3.2
119
89
4
543
28
18
14
39
1.89
11114--11198
44
1.9
44
87
0
125
45
8
10
35
1.69
14423--14477
19
2.9
19
91
0
74
18
21
21
38
1.94
14727--14774
15
3.2
15
74
11
53
31
6
33
29
1.82
19669--19693
9
2.8
9
100
0
50
20
32
24
24
1.98
29872--29896
12
2.1
12
100
0
50
92
0
8
0
0.40
33298--33357
15
4.0
15
73
0
57
31
20
35
13
1.91
36232--36369
35
3.9
35
98
0
267
14
36
39
8
1.77
36339--36399
27
2.2
28
83
11
74
13
39
39
8
1.74
39262--39318
13
4.7
12
81
12
55
36
5
8
49
1.57
41551--42178
345
1.8
341
90
3
1010
40
8
12
39
1.72
43076--43119
21
2.2
20
83
4
52
36
9
4
50
1.55
43316--43345
8
3.8
8
100
0
60
40
0
10
50
1.36
44845--44869
13
1.9
13
100
0
50
56
0
0
44
0.99
46644--46668
13
1.9
13
100
0
50
40
0
0
60
0.97
46641--46671
16
1.9
16
93
0
53
41
0
0
58
0.98

Tables:   1

The End!