Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016617.1 Corchorus olitorius cultivar O-4 contig16650, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13941
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Found at i:88 original size:21 final size:21
Alignment explanation
Indices: 49--91 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
39 GTATCCTTCT
**
49 ATATCTTTGTTTGACAAATTA
1 ATATCTTTGTTCAACAAATTA
*
70 ATATCTTTGTTCAATAAATTA
1 ATATCTTTGTTCAACAAATTA
91 A
1 A
92 GCGATAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (21 bp):
ATATCTTTGTTCAACAAATTA
Found at i:443 original size:106 final size:108
Alignment explanation
Indices: 242--448 Score: 274
Period size: 106 Copynumber: 1.9 Consensus size: 108
232 ATTTGCTAAC
* * * * * *
242 CACCTACTCACATATATGATTAGAATCGAGAAAAAAAAAACTCTATAACTAAAATGATTTGCTAA
1 CACCTACGCACATATATGATTAAAAACCAGAAAAAAAAAACTCTAAAACTAAAATAATTTGCTAA
* * *
307 CCACATATCAAGAATGATCGATGCGCCAGCGCGAGCTGATAAT
66 CCACAAATCAAGAATGATCAACGCGCCAGCGCGAGCTGATAAT
* *
350 CACCTACGCACATATATGA-TAAAAACCA-AGAAAAAAAACTCTAAAACTAGAATAATTTGCTAA
1 CACCTACGCACATATATGATTAAAAACCAGAAAAAAAAAACTCTAAAACTAAAATAATTTGCTAA
* * *
413 CCACAAATCAAGAATGCTCAACGCGTCAGCGTGAGC
66 CCACAAATCAAGAATGATCAACGCGCCAGCGCGAGC
449 CGATCAACTT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
106 61 0.72
107 6 0.07
108 18 0.21
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.21
Consensus pattern (108 bp):
CACCTACGCACATATATGATTAAAAACCAGAAAAAAAAAACTCTAAAACTAAAATAATTTGCTAA
CCACAAATCAAGAATGATCAACGCGCCAGCGCGAGCTGATAAT
Found at i:2014 original size:28 final size:28
Alignment explanation
Indices: 1977--2033 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
1967 CTACCAAATT
* *
1977 AAAAGTACTCTTTTTATTAATCTAAAAA
1 AAAAGTACTCTTTCTATTAATCCAAAAA
*
2005 AAAAGTACTCTTTCTATTTATCCAAAAA
1 AAAAGTACTCTTTCTATTAATCCAAAAA
2033 A
1 A
2034 GTGAAACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.37
Consensus pattern (28 bp):
AAAAGTACTCTTTCTATTAATCCAAAAA
Found at i:2093 original size:26 final size:26
Alignment explanation
Indices: 2057--2110 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
2047 CATTATAGTG
2057 TATATATATATATTATTTCTATTGTT
1 TATATATATATATTATTTCTATTGTT
2083 TATATATATATATTATTTCTATTGTT
1 TATATATATATATTATTTCTATTGTT
2109 TA
1 TA
2111 AGAACATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATATATATATATTATTTCTATTGTT
Found at i:2119 original size:26 final size:26
Alignment explanation
Indices: 2064--2121 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
2054 GTGTATATAT
* *
2064 ATATATTATTTCTATTGTTTATATAT
1 ATATATTATTTCTATTGTTTATAAAC
2090 ATATATTATTTCTATTGTTTA-AGAAC
1 ATATATTATTTCTATTGTTTATA-AAC
2116 ATATAT
1 ATATAT
2122 ATGTCATCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (26 bp):
ATATATTATTTCTATTGTTTATAAAC
Found at i:5704 original size:12 final size:12
Alignment explanation
Indices: 5675--5707 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
5665 TATCATGTTT
5675 AAATTAAAA-AA
1 AAATTAAAATAA
5686 AAATTAAAATAA
1 AAATTAAAATAA
*
5698 TAATTAAAAT
1 AAATTAAAAT
5708 TAATTATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
AAATTAAAATAA
Found at i:7948 original size:10 final size:10
Alignment explanation
Indices: 7933--7961 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7923 CCATATTAAC
7933 AATTTTATTT
1 AATTTTATTT
7943 AATTTTATTT
1 AATTTTATTT
7953 -ATTTTATTT
1 AATTTTATTT
7962 CCTTTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
AATTTTATTT
Found at i:9326 original size:33 final size:34
Alignment explanation
Indices: 9260--9340 Score: 110
Period size: 33 Copynumber: 2.4 Consensus size: 34
9250 CAGATTCTGG
* * *
9260 ATTTTGAGTTTTGAACATGACATGCAAATTTTGA
1 ATTTTGAGTTTTGAACATAAAATGCAAAATTTGA
*
9294 GTTTTGAGTTTTGAA-ATAAAATGCAAAATTTGA
1 ATTTTGAGTTTTGAACATAAAATGCAAAATTTGA
*
9327 ATTTTGACTTTTGA
1 ATTTTGAGTTTTGA
9341 CTTTTGAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
33 27 0.66
34 14 0.34
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.43
Consensus pattern (34 bp):
ATTTTGAGTTTTGAACATAAAATGCAAAATTTGA
Found at i:9331 original size:40 final size:42
Alignment explanation
Indices: 9286--9365 Score: 110
Period size: 40 Copynumber: 1.9 Consensus size: 42
9276 ATGACATGCA
* *
9286 AATTTTGAGTTTTGAGTTTTGA-AATAAAATGC-AAAATTTG
1 AATTTTGACTTTTGACTTTTGAGAATAAAATGCTAAAATTTG
*
9326 AATTTTGACTTTTGACTTTTGAGGAATGAAATGCTAAAAT
1 AATTTTGACTTTTGACTTTTGA-GAATAAAATGCTAAAAT
9366 GCAGGTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 20 0.59
42 9 0.26
43 5 0.15
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.41
Consensus pattern (42 bp):
AATTTTGACTTTTGACTTTTGAGAATAAAATGCTAAAATTTG
Found at i:9567 original size:33 final size:33
Alignment explanation
Indices: 9521--9598 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
9511 AGAAATTGTG
* * *
9521 GATTTTGAGCTTTGAGTTTTGATAA-GATATGCA
1 GATTTTGAACTTTGAATTTTGA-AATGAAATGCA
9554 GATTTTGAACTTTGAATTTTGAAATGAAATGCA
1 GATTTTGAACTTTGAATTTTGAAATGAAATGCA
*
9587 AATTTTGAACTT
1 GATTTTGAACTT
9599 CTTAATTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.05
33 38 0.95
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (33 bp):
GATTTTGAACTTTGAATTTTGAAATGAAATGCA
Found at i:9696 original size:56 final size:55
Alignment explanation
Indices: 9636--9745 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 55
9626 AATTCAACCT
* **
9636 TGATCAT-GGAAACATTTCTTGGAACGACCGCACTGGATCAA-TTTAGAGATCAACTC
1 TGATCATCGGAAAC--TTCTTGGAACGACCACACCAGATCAACTTTA-AGATCAACTC
* *
9692 TGATCATCGTAAACTTCTTGGAATGACCACACCAGATCAACTTTAAGATCAACT
1 TGATCATCGGAAACTTCTTGGAACGACCACACCAGATCAACTTTAAGATCAACT
9746 AAGATTTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
55 31 0.66
56 11 0.23
57 5 0.11
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (55 bp):
TGATCATCGGAAACTTCTTGGAACGACCACACCAGATCAACTTTAAGATCAACTC
Found at i:9819 original size:54 final size:52
Alignment explanation
Indices: 9756--9959 Score: 300
Period size: 54 Copynumber: 3.8 Consensus size: 52
9746 AAGATTTTTG
* * * *
9756 AAAACTTCTATGGAAGACCACACAGGGTCGTCTGAAGATCAACTTAGACATCT
1 AAAACTTCTATGAAAGACCACACTGGGTCATCTTAAGATCAACTTAGAC-TCT
*
9809 AAAAGCTTCTATGAAAGACCAAACTGGGTCATCTTAAGATCAACTTAGATCTCT
1 AAAA-CTTCTATGAAAGACCACACTGGGTCATCTTAAGATCAACTTAGA-CTCT
*
9863 GAAAACTTTTATGAAAGACCACACTGGGTCATCTTAAGATCAACTTAGACCTCT
1 -AAAACTTCTATGAAAGACCACACTGGGTCATCTTAAGATCAACTTAGA-CTCT
9917 AAAAGCTTCTATGAAAGACCACACTGGGTCATCTTAAGATCAA
1 AAAA-CTTCTATGAAAGACCACACTGGGTCATCTTAAGATCAA
9960 TTTTCTAGAG
Statistics
Matches: 138, Mismatches: 9, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
53 8 0.06
54 125 0.91
55 5 0.04
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (52 bp):
AAAACTTCTATGAAAGACCACACTGGGTCATCTTAAGATCAACTTAGACTCT
Found at i:9881 original size:108 final size:108
Alignment explanation
Indices: 9734--9959 Score: 362
Period size: 108 Copynumber: 2.1 Consensus size: 108
9724 CAGATCAACT
* * * *
9734 TTAAGATCAACTAAGATTTTTGAAAACTTCTATGGAAGACCACACAGGGTCGTCTGAAGATCAAC
1 TTAAGATCAACTAAGATCTCTGAAAACTTCTATGAAAGACCACACAGGGTCATCTGAAGATCAAC
9799 TTAGACATCTAAAAGCTTCTATGAAAGACCAAACTGGGTCATC
66 TTAGACATCTAAAAGCTTCTATGAAAGACCAAACTGGGTCATC
* * * *
9842 TTAAGATCAACTTAGATCTCTGAAAACTTTTATGAAAGACCACACTGGGTCATCTTAAGATCAAC
1 TTAAGATCAACTAAGATCTCTGAAAACTTCTATGAAAGACCACACAGGGTCATCTGAAGATCAAC
* *
9907 TTAGACCTCTAAAAGCTTCTATGAAAGACCACACTGGGTCATC
66 TTAGACATCTAAAAGCTTCTATGAAAGACCAAACTGGGTCATC
9950 TTAAGATCAA
1 TTAAGATCAA
9960 TTTTCTAGAG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (108 bp):
TTAAGATCAACTAAGATCTCTGAAAACTTCTATGAAAGACCACACAGGGTCATCTGAAGATCAAC
TTAGACATCTAAAAGCTTCTATGAAAGACCAAACTGGGTCATC
Found at i:10231 original size:111 final size:110
Alignment explanation
Indices: 10144--10489 Score: 507
Period size: 111 Copynumber: 3.1 Consensus size: 110
10134 ATTTTGATGG
* * *
10144 GACACCTAAAGAGGGACCTTAAATAAGGATTTAATAAGAAACCTAAACAGGAATCTTGAACCAGA
1 GACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAATCTTGAACAAGA
*
10209 TTTCGATGAGACAACTAAACAGGGACCTTAAATAAGGATTTGATAA
66 TTT-GATGAGACAACTAAACAGGAACCTTAAATAAGGATTTGATAA
* * *
10255 GACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAATAGGGACCTT-ATACAAG
1 GACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAATCTTGA-ACAA-
* * * *
10319 GATTTGATAAGACACCTAAACAGGAACCTTAAATAAGGATTTAATCA
64 GATTTGATGAGACAACTAAACAGGAACCTTAAATAAGGATTTGATAA
* *
10366 GACACCTAAACAGGGAGCTTAAACAAGGATTTAATAAGACACCTAAACAGGAATCTTGAACAAGA
1 GACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAATCTTGAACAAGA
*
10431 TTTTGATGAAAC-ACGTAAACAGGAACCTTAAATAAGGATTTGATAA
66 -TTTGATGAGACAAC-TAAACAGGAACCTTAAATAAGGATTTGATAA
10477 GACACCTAAACAG
1 GACACCTAAACAG
10490 AAATCTTGAA
Statistics
Matches: 209, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
110 4 0.02
111 199 0.95
112 6 0.03
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (110 bp):
GACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAATCTTGAACAAGA
TTTGATGAGACAACTAAACAGGAACCTTAAATAAGGATTTGATAA
Found at i:10510 original size:37 final size:37
Alignment explanation
Indices: 10069--10511 Score: 437
Period size: 37 Copynumber: 12.0 Consensus size: 37
10059 GATTTTGAAG
* *
10069 AGACACCTAAACA-GATACCTTAAATAAGGATTTAATA
1 AGACACCTAAACAGGA-ACCTTAAACAAGGATTTGATA
* * ** * *
10106 AGAAACCTACACAGGAATTTTGAACAA-GATTTTGATG
1 AGACACCTAAACAGGAACCTTAAACAAGGA-TTTGATA
* * * * *
10143 GGACACCTAAAGAGGGACCTTAAATAAGGATTTAATA
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* * * * *
10180 AGAAACCTAAACAGGAATCTTGAACCA-GATTTCGATG
1 AGACACCTAAACAGGAACCTTAAACAAGGATTT-GATA
* * *
10217 AGACAACTAAACAGGGACCTTAAATAAGGATTTGATA
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* * *
10254 AGACACCTAAACAGGGACCTTAAATAAGGATTTAATA
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* * *
10291 AGACACCTAAATAGGGACCTTATACAAGGATTTGATA
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* * *
10328 AGACACCTAAACAGGAACCTTAAATAAGGATTTAATC
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* * *
10365 AGACACCTAAACAGGGAGCTTAAACAAGGATTTAATA
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* *
10402 AGACACCTAAACAGGAATCTTGAACAA-GATTTTGATGA
1 AGACACCTAAACAGGAACCTTAAACAAGGA-TTTGAT-A
* *
10440 A-ACACGTAAACAGGAACCTTAAATAAGGATTTGATA
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
* * * *
10476 AGACACCTAAACAGAAATCTTGAACAAGGTTTTGAT
1 AGACACCTAAACAGGAACCTTAAACAAGGATTTGAT
10512 GAAACTGAAT
Statistics
Matches: 330, Mismatches: 67, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
36 11 0.03
37 306 0.93
38 13 0.04
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (37 bp):
AGACACCTAAACAGGAACCTTAAACAAGGATTTGATA
Found at i:10516 original size:74 final size:74
Alignment explanation
Indices: 10059--10513 Score: 554
Period size: 74 Copynumber: 6.1 Consensus size: 74
10049 CCTAAACTGG
* ** * *
10059 GATTTTGAAGAGACACCTAAACAGATACCTTAAATAAGGATTTAATAAGAAACCTACACAGGAAT
1 GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAAT
*
10124 TTTGAACAA
66 CTTGAACAA
* * *
10133 GATTTTGATGGGACACCTAAAGAGGGACCTTAAATAAGGATTTAATAAGAAACCTAAACAGGAAT
1 GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAAT
*
10198 CTTGAACCA
66 CTTGAACAA
* * * * *
10207 GATTTCGATGAGACAACTAAACAGGGACCTTAAATAAGGATTTGATAAGACACCTAAACAGGGAC
1 GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAAT
* *
10272 CTTAAATAA
66 CTTGAACAA
* * * * * *
10281 GGA-TTTAATAAGACACCTAAATAGGGACCTTATACAAGGATTTGATAAGACACCTAAACAGGAA
1 -GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAA
* * *
10345 CCTTAAATAA
65 TCTTGAACAA
* * * *
10355 GGA-TTTAATCAGACACCTAAACAGGGAGCTTAAACAAGGATTTAATAAGACACCTAAACAGGAA
1 -GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAA
10419 TCTTGAACAA
65 TCTTGAACAA
* * * * *
10429 GATTTTGATGAAACACGTAAACAGGAACCTTAAATAAGGATTTGATAAGACACCTAAACAGAAAT
1 GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAAT
10494 CTTGAACAA
66 CTTGAACAA
*
10503 GGTTTTGATGA
1 GATTTTGATGA
10514 AACTGAATTT
Statistics
Matches: 334, Mismatches: 45, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
73 2 0.01
74 330 0.99
75 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (74 bp):
GATTTTGATGAGACACCTAAACAGGGACCTTAAATAAGGATTTAATAAGACACCTAAACAGGAAT
CTTGAACAA
Found at i:11449 original size:87 final size:87
Alignment explanation
Indices: 11299--11460 Score: 227
Period size: 87 Copynumber: 1.9 Consensus size: 87
11289 TGCCCCAAAC
* * * *
11299 CTTCTTCCAATTTGGTCATGTATTGATATTCCCAACTTCATTGATGATTCTAGATCAGCTTCTCA
1 CTTCCTCCAATTTGATCATGCATTGATATTCCCAACTTAATTGATGATTCTAGATCAGCTTCTCA
11364 CCTTAAGAAATGTTTCCCAATT
66 CCTTAAGAAATGTTTCCCAATT
* * * *
11386 CTTCCTCCAATTTTATCATGCATTGATATTCCCAACTTAATTGATGTTTCTGGATTC-GTTTCTC
1 CTTCCTCCAATTTGATCATGCATTGATATTCCCAACTTAATTGATGATTCTAGA-TCAGCTTCTC
*
11450 ATCTTAAGAAA
65 ACCTTAAGAAA
11461 CCTTCAAACA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
87 63 0.97
88 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.41
Consensus pattern (87 bp):
CTTCCTCCAATTTGATCATGCATTGATATTCCCAACTTAATTGATGATTCTAGATCAGCTTCTCA
CCTTAAGAAATGTTTCCCAATT
Found at i:11606 original size:18 final size:17
Alignment explanation
Indices: 11580--11618 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
11570 CAATTTGAAC
*
11580 CTTTTCCTTTTGATTTTT
1 CTTTGCCTTTT-ATTTTT
*
11598 CTTTGCCTTTTCTTTTT
1 CTTTGCCTTTTATTTTT
11615 CTTT
1 CTTT
11619 AGATTGATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.03, C:0.21, G:0.05, T:0.72
Consensus pattern (17 bp):
CTTTGCCTTTTATTTTT
Found at i:12283 original size:13 final size:13
Alignment explanation
Indices: 12256--12320 Score: 69
Period size: 14 Copynumber: 4.8 Consensus size: 13
12246 ACTCAAAACC
12256 TTTTTGAAAACTCA
1 TTTTTGAAAA-TCA
12270 TTTTTGAAAATCA
1 TTTTTGAAAATCA
12283 TTTCTTGAAAA-CA
1 TTT-TTGAAAATCA
*
12296 GTTTCTTGAAAATTA
1 -TTT-TTGAAAATCA
*
12311 TATTTGAAAA
1 TTTTTGAAAA
12321 ACGTCCTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
13 15 0.33
14 30 0.65
15 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (13 bp):
TTTTTGAAAATCA
Done.