Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016622.1 Corchorus olitorius cultivar O-4 contig16655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11781

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
629--666
9
4.3
9
90
3
60
34
18
0
47
1.49
2697--2743
13
3.5
13
80
8
51
4
2
14
78
0.99
2697--2739
6
6.7
6
82
12
50
4
2
13
79
1.00
7819--7896
22
3.6
21
81
6
84
37
6
12
43
1.69
7820--7903
44
1.9
44
80
4
98
36
8
11
42
1.72
7931--8144
22
9.8
20
70
18
119
36
13
14
35
1.85
7931--8116
44
4.3
43
76
10
164
36
13
13
36
1.85
7952--8145
44
4.4
42
79
13
196
36
12
15
35
1.85
7931--8116
66
2.8
65
82
9
200
36
13
13
36
1.85
8175--8239
22
3.0
22
79
0
76
40
9
16
33
1.81
8391--8907
22
23.5
21
67
17
175
39
9
15
35
1.80
10240--10330
47
2.0
46
95
2
164
28
10
10
49
1.72
10306--10347
17
2.5
17
100
0
84
26
11
21
40
1.88

Tables:   1

The End!