Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016623.1 Corchorus olitorius cultivar O-4 contig16656, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73753

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22532--22793
107
2.5
105
89
2
393
40
9
8
41
1.67
22808--22838
11
2.8
11
95
0
53
87
0
9
3
0.66
28167--28351
102
1.8
102
92
2
318
38
12
9
39
1.76
35347--35454
54
2.0
53
96
1
198
38
15
12
33
1.85
35362--35444
24
3.2
24
64
23
60
38
15
10
34
1.83
35919--35982
32
2.0
32
100
0
128
43
6
15
34
1.72
36285--36374
44
2.0
46
87
8
132
55
2
4
37
1.32
36295--36397
44
2.2
44
83
8
116
58
0
4
35
1.26
36469--36628
84
1.9
83
92
3
268
51
2
10
36
1.49
43025--43061
17
2.2
17
100
0
74
21
16
0
62
1.33
43218--43376
31
5.1
31
85
0
201
16
22
25
35
1.94
43767--43791
11
2.3
11
100
0
50
24
0
16
60
1.36
48512--48553
19
2.2
19
95
0
75
23
28
30
16
1.96
52055--52084
6
5.0
6
95
0
51
16
13
16
53
1.73
66637--66692
22
2.3
25
76
23
73
16
17
12
53
1.73
66648--66698
22
2.3
22
100
0
102
13
21
13
50
1.76
67822--67920
51
1.9
51
85
0
135
24
12
23
40
1.88
70122--70228
31
3.6
29
75
7
81
26
17
21
34
1.96
72197--72229
17
1.9
17
93
0
57
30
21
24
24
1.99

Tables:   1

The End!