Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016628.1 Corchorus olitorius cultivar O-4 contig16661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48455

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
801--917
22
5.3
22
73
17
73
42
9
12
35
1.75
799--918
44
2.7
43
80
5
123
42
10
12
35
1.76
1130--1212
22
3.8
22
75
9
62
43
9
12
34
1.75
1361--1505
22
6.6
22
78
4
123
33
11
14
40
1.82
1426--1571
44
3.3
44
83
3
161
34
11
17
36
1.86
1448--1527
22
3.6
22
87
0
106
33
15
13
37
1.86
1730--2093
170
2.1
169
79
6
405
30
19
19
30
1.97
4149--4197
22
2.3
22
78
3
55
12
53
0
34
1.39
18498--18527
11
2.7
11
94
0
51
13
33
10
43
1.77
18530--18631
51
2.0
50
80
12
111
21
22
13
42
1.88
18972--19047
21
3.5
21
76
15
57
40
9
14
35
1.78
18995--19143
22
6.8
21
73
10
95
36
9
13
40
1.77
20655--20733
40
2.0
40
97
0
149
34
6
16
43
1.73
20655--20719
20
3.2
20
64
23
55
33
6
16
43
1.73
20666--20731
22
3.2
22
62
24
52
34
7
15
42
1.75
20782--20853
37
1.9
37
97
0
135
26
12
29
31
1.93
21382--21426
22
2.0
22
100
0
90
33
17
26
22
1.96
21404--21535
57
2.3
57
90
0
219
31
25
19
23
1.98
23778--23826
18
2.7
18
93
6
82
8
32
10
48
1.66
24167--24222
28
2.0
28
100
0
112
35
25
10
28
1.89
27770--27801
15
2.1
15
94
0
55
40
18
25
15
1.90
36947--37185
119
2.0
119
95
1
426
32
16
15
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37597--37675
38
2.1
38
95
0
140
34
25
7
32
1.84
46153--46188
18
1.9
19
88
5
56
25
0
19
55
1.43
47408--47461
18
2.9
18
94
2
90
40
9
22
27
1.84

Tables:   1

The End!