Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016631.1 Corchorus olitorius cultivar O-4 contig16664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7952
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:7101 original size:3 final size:3

Alignment explanation


    Indices: 7093--7150  Score: 107
    Period size: 3  Copynumber: 19.0  Consensus size: 3

       7083 CATTTAGTTT

                                                                        
       7093 TTA TTA TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                           
       7139 TTA TTA TTA TTA
          1 TTA TTA TTA TTA

       7151 AATGTTCTTA


Statistics
Matches: 54,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   3   51  0.94
   4    3  0.06

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (3 bp):   
TTA

Done.