Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016632.1 Corchorus olitorius cultivar O-4 contig16665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25380

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255--286
15
2.1
15
100
0
64
28
6
12
53
1.62
1973--2140
31
5.6
29
72
11
97
33
17
19
29
1.94
1978--2139
60
2.7
60
90
1
245
35
17
19
28
1.94
2008--2108
29
3.4
29
74
15
107
33
18
19
27
1.96
2180--2319
60
2.3
60
91
0
217
27
18
17
35
1.94
2213--2311
29
3.4
28
67
15
74
27
19
19
34
1.95
2180--2341
60
2.7
60
86
3
213
27
19
17
35
1.94
4547--4585
2
19.5
2
100
0
78
0
48
0
51
1.00
9598--9639
20
2.1
20
100
0
84
33
40
0
26
1.56
16078--16104
6
4.5
6
100
0
54
0
33
18
48
1.49

Tables:   1

The End!