Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016633.1 Corchorus olitorius cultivar O-4 contig16666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168475

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12218--12244
12
2.2
12
100
0
54
29
7
18
44
1.77
12541--12574
14
2.4
14
95
0
59
23
8
0
67
1.18
14576--14911
166
2.0
165
86
6
458
44
8
10
36
1.70
15116--15156
21
1.9
22
85
5
57
43
29
17
9
1.80
16185--16500
161
2.0
160
86
7
444
44
2
11
41
1.53
20292--20383
31
3.3
31
62
25
85
30
21
25
22
1.99
20296--20401
53
2.0
53
100
0
212
32
22
22
22
1.98
20313--20395
26
3.2
26
62
21
64
34
20
22
21
1.96
27350--27527
86
2.1
86
93
0
302
25
15
18
40
1.90
27359--27546
86
2.2
86
89
0
277
25
15
19
39
1.90
31863--32029
87
1.9
87
85
7
232
31
23
19
24
1.98
31948--32242
99
3.0
98
77
8
303
32
24
20
22
1.97
33791--33818
4
7.0
4
100
0
56
25
0
75
0
0.81
34011--34047
2
18.5
2
94
0
65
48
0
2
48
1.15
41394--41441
22
2.2
22
81
7
53
47
6
16
29
1.71
42612--42684
31
2.4
31
92
0
119
28
6
34
30
1.83
60541--60612
35
2.1
35
84
5
92
31
2
30
34
1.72
61522--61665
22
6.5
22
71
10
89
38
10
11
39
1.76
61547--61622
21
3.5
20
77
13
71
39
11
9
39
1.74
61541--61673
65
2.1
63
83
8
162
38
9
10
41
1.73
103622--103697
3
25.3
3
100
0
152
32
0
0
67
0.91
104656--104750
45
2.2
41
83
9
120
36
2
22
38
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105181--105285
53
2.0
53
96
3
196
57
7
5
29
1.50
106175--106345
90
1.9
89
87
3
254
23
26
24
25
2.00
106481--106555
34
2.2
34
97
0
141
26
13
29
30
1.94
122133--122171
14
2.8
13
88
7
51
46
0
0
53
1.00
123817--124014
87
2.2
89
87
8
298
23
8
15
52
1.70
130214--130242
2
14.5
2
100
0
58
51
0
0
48
1.00
130242--130274
2
16.5
2
100
0
66
51
0
48
0
1.00
134261--134286
13
2.0
13
100
0
52
76
7
15
0
0.99
146562--146588
3
9.0
3
100
0
54
33
33
33
0
1.58
147300--147372
28
2.7
27
89
6
112
32
5
9
52
1.57
148023--148224
31
6.5
31
85
1
217
31
23
24
19
1.98
150162--150248
44
2.0
44
95
0
156
35
20
12
31
1.90
161649--161689
2
20.5
2
85
9
57
51
2
2
43
1.28
165328--165376
24
2.0
24
100
0
98
46
16
8
28
1.75
168114--168148
10
3.3
10
85
14
52
51
0
0
48
1.00

Tables:   1

The End!