Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016634.1 Corchorus olitorius cultivar O-4 contig16667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44514

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10125--10252
63
2.0
64
95
1
231
29
18
21
30
1.97
15506--15568
6
10.2
6
86
6
54
74
0
20
4
0.99
15534--15572
12
3.2
12
88
3
51
82
0
10
7
0.86
15756--15814
29
2.0
31
90
6
95
50
15
8
25
1.71
16840--16868
15
1.9
15
100
0
58
13
34
27
24
1.93
16865--17004
69
2.0
69
95
0
253
33
14
27
24
1.94
17025--17098
36
2.1
36
94
0
130
32
20
29
17
1.95
21250--21299
8
6.0
8
86
9
73
24
22
0
54
1.45
21250--21301
26
2.0
25
92
3
86
25
21
0
53
1.45
21885--21946
25
2.6
24
87
5
81
59
4
6
29
1.43
24292--24321
15
2.0
15
93
0
51
0
16
3
80
0.85
25826--26098
136
2.0
136
97
0
510
44
6
7
41
1.60
26186--26349
60
2.7
60
82
5
179
45
16
15
21
1.85
26214--26325
29
3.8
29
74
4
98
50
16
15
16
1.78
29300--29337
3
13.0
3
94
5
69
31
0
0
68
0.90
29693--29722
16
1.9
15
93
6
51
46
16
6
30
1.73
31166--31274
54
2.0
54
96
0
200
24
22
19
33
1.97
31231--31261
15
2.1
15
93
0
53
12
29
25
32
1.93
31256--31386
69
1.9
69
95
0
235
34
12
29
23
1.91
31972--32017
23
2.0
24
95
4
85
36
17
28
17
1.92
33334--33394
32
1.9
32
96
0
113
57
4
8
29
1.49
39659--39688
7
4.4
7
95
4
53
90
0
10
0
0.47

Tables:   1

The End!