Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016635.1 Corchorus olitorius cultivar O-4 contig16668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104609

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
881--915
1
35.0
1
100
0
70
100
0
0
0
0.00
6118--6194
30
2.5
30
91
6
120
25
10
28
35
1.89
6625--6688
31
2.1
31
88
5
94
18
6
12
62
1.50
9775--9846
35
2.1
35
100
0
144
16
13
13
55
1.69
11476--11514
12
3.2
12
92
0
69
17
23
15
43
1.87
11683--11708
12
2.2
12
100
0
52
92
0
7
0
0.39
18658--18776
30
4.0
30
89
0
184
29
10
36
23
1.89
21067--21126
19
3.1
19
76
9
59
0
15
10
75
1.05
46448--46512
34
1.9
34
90
0
103
23
13
20
43
1.87
58945--58978
15
2.2
16
94
5
61
67
5
11
14
1.39
59097--59148
26
2.0
26
100
0
104
46
11
19
23
1.82
78370--78448
40
2.0
40
92
0
131
29
13
15
41
1.85
78954--78990
10
3.5
11
85
10
51
0
18
0
81
0.70
85465--85512
6
8.0
6
84
9
62
33
0
50
16
1.46
87546--87577
2
16.0
2
100
0
64
50
0
0
50
1.00
89058--89167
58
1.9
58
88
3
168
32
14
19
33
1.92
89675--89744
36
1.9
36
88
0
104
22
10
7
60
1.53
90257--90674
204
2.0
204
93
4
705
44
8
10
37
1.69
90746--90792
25
1.9
24
91
4
76
55
6
6
31
1.51
90783--90863
39
2.0
40
92
2
137
37
3
8
50
1.51
91079--91126
2
24.0
2
87
8
71
47
0
4
47
1.21
96036--96273
76
3.1
77
89
5
388
31
18
13
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102600--102737
65
2.1
65
98
0
267
51
18
10
20
1.74
102859--103021
84
1.9
85
88
3
249
50
9
5
34
1.59
104470--104584
31
3.8
31
69
17
105
33
18
19
29
1.95
104474--104609
60
2.3
60
91
5
213
34
17
19
28
1.94
104519--104609
29
3.1
29
76
17
114
32
17
16
32
1.93

Tables:   1

The End!