Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016638.1 Corchorus olitorius cultivar O-4 contig16671, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3533
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:596 original size:2 final size:2

Alignment explanation


    Indices: 589--615  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        579 TCACCGCCTG

                                                    
        589 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

        616 TCCTTACTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:3508 original size:2 final size:2

Alignment explanation


    Indices: 3501--3531  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       3491 TGTCCAACCA

                                                          
       3501 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       3532 GT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.