Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016639.1 Corchorus olitorius cultivar O-4 contig16672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61111

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2217--2332
48
2.5
45
83
5
126
42
6
22
28
1.79
2194--2327
70
1.9
70
81
3
162
40
6
20
32
1.79
2047--2347
22
13.5
23
70
8
151
40
9
17
32
1.82
2393--2445
21
2.5
21
78
9
54
33
11
13
41
1.80
2364--2535
22
7.9
22
74
6
143
34
12
15
38
1.84
2429--2566
44
3.1
45
83
4
156
36
11
15
36
1.84
2453--2595
66
2.2
66
79
0
151
34
11
14
38
1.83
2363--2594
22
10.5
22
72
12
120
34
11
15
38
1.84
2429--2595
44
3.8
43
81
3
147
35
11
14
37
1.84
4838--4886
23
2.1
23
88
0
71
53
8
10
28
1.63
5497--5552
22
2.6
22
80
2
69
37
8
14
39
1.77
5540--5791
22
11.7
22
65
12
96
39
12
15
32
1.84
19830--19879
24
2.1
24
100
0
100
28
26
16
30
1.96
32185--32228
2
22.0
2
100
0
88
0
0
50
50
1.00
51004--51060
26
2.2
26
87
0
78
50
17
3
28
1.62
55585--55881
150
2.0
150
99
0
585
28
14
16
40
1.87
59707--59737
16
1.9
16
93
0
53
38
9
6
45
1.63
59746--61111
199
6.8
202
87
4
1885
33
19
13
33
1.90
59746--61111
602
2.3
605
88
4
2003
33
19
13
33
1.90

Tables:   1

The End!