Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016642.1 Corchorus olitorius cultivar O-4 contig16675, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 872

Length: 1454
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37


Found at i:1171 original size:30 final size:31

Alignment explanation


    Indices: 1095--1171  Score: 104
    Period size: 29  Copynumber: 2.5  Consensus size: 31

       1085 ATACCGTACA

                                *          
       1095 GGTCCCTCTACTTACAAAAAGGGATCAATTT
          1 GGTCCCTCTACTTACAAAAACGGATCAATTT

                  *              *         
       1126 GGTCCCCCTAC-TACAAAAACTG-TCAATTT
          1 GGTCCCTCTACTTACAAAAACGGATCAATTT

                   *         
       1155 GGTCCCTTTACTTACAA
          1 GGTCCCTCTACTTACAA

       1172 TTTGGTGTCA


Statistics
Matches: 40,  Mismatches: 5, Indels: 3
        0.83            0.10        0.06

Matches are distributed among these distances:
  29   16  0.40
  30   14  0.35
  31   10  0.25

ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30


Consensus pattern (31 bp):   
GGTCCCTCTACTTACAAAAACGGATCAATTT
Done.