Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016645.1 Corchorus olitorius cultivar O-4 contig16678, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9413
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:2000 original size:12 final size:12

Alignment explanation


    Indices: 1983--2012  Score: 51
    Period size: 12  Copynumber: 2.4  Consensus size: 12

       1973 GTAACAAGCA

                        
       1983 TTTGCCTGATCT
          1 TTTGCCTGATCT

                        
       1995 TTTGCCTGATCT
          1 TTTGCCTGATCT

                  
       2007 TGTTGC
          1 T-TTGC

       2013 TTCTGTTGTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   13  0.76
  13    4  0.24

ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50


Consensus pattern (12 bp):   
TTTGCCTGATCT
Done.