Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016647.1 Corchorus olitorius cultivar O-4 contig16680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124261
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--33 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34 TATTGCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:501 original size:137 final size:137
Alignment explanation
Indices: 255--528 Score: 494
Period size: 137 Copynumber: 2.0 Consensus size: 137
245 TATATATATT
*
255 TTTTTTGGGTACATAAGATGCCGATAATGTCAACTAAGGCCTTCGAACCGCAACACCATTTACGT
1 TTTTTTGGGTACATAAGATGCCGACAATGTCAACTAAGGCCTTCGAACCGCAACACCATTTACGT
320 CTTGTTCCAGCAGCGGGAGTAACTCTGTAGGAGGCTCAAGGAATAGTTTGCAACCATGATCTAGA
66 CTTGTTCCAGCAGCGGGAGTAACTCTGTAGGAGGCTCAAGGAATAGTTTGCAACCATGATCTAGA
385 CCCTGAC
131 CCCTGAC
* * * *
392 TTTTTTGGGTACATAAGATGCCGACAATGTCAGCTAAGGCCTTCGAACCGTAACACTATTTGCGT
1 TTTTTTGGGTACATAAGATGCCGACAATGTCAACTAAGGCCTTCGAACCGCAACACCATTTACGT
*
457 CTTGTTCCGGCAGCGGGAGTAACTCTGTAGGAGGCTCAAGGAATAGTTTGCAACCATGATCTAGA
66 CTTGTTCCAGCAGCGGGAGTAACTCTGTAGGAGGCTCAAGGAATAGTTTGCAACCATGATCTAGA
522 CCCTGAC
131 CCCTGAC
529 CCAGATTCGC
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 131 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (137 bp):
TTTTTTGGGTACATAAGATGCCGACAATGTCAACTAAGGCCTTCGAACCGCAACACCATTTACGT
CTTGTTCCAGCAGCGGGAGTAACTCTGTAGGAGGCTCAAGGAATAGTTTGCAACCATGATCTAGA
CCCTGAC
Found at i:4597 original size:4 final size:4
Alignment explanation
Indices: 4590--4616 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
4580 TACACACACA
4590 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
4617 AAAAAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:10468 original size:12 final size:13
Alignment explanation
Indices: 10453--10486 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
10443 TATACAAATA
10453 AAAAAAAAG-AAG
1 AAAAAAAAGAAAG
10465 AAAAAAAAGAAAG
1 AAAAAAAAGAAAG
*
10478 AAGAAAAAG
1 AAAAAAAAG
10487 CTAAATAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAG
Found at i:10477 original size:16 final size:15
Alignment explanation
Indices: 10452--10485 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
10442 TTATACAAAT
10452 AAAAAAAAAGAAGAA
1 AAAAAAAAAGAAGAA
10467 AAAAAAGAAAGAAGAA
1 AAAAAA-AAAGAAGAA
10483 AAA
1 AAA
10486 GCTAAATAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAGAA
Found at i:15366 original size:115 final size:115
Alignment explanation
Indices: 15112--15466 Score: 503
Period size: 115 Copynumber: 3.1 Consensus size: 115
15102 GCACACCTGT
* * * *
15112 TGCCAATAGTGGGGTGTGTCAAAAGTGGATCATAACTCAAGATGGAAACAAGACCTTGTGTTTAC
1 TGCCACTA-TGGGGTGTGTCAAGAGTGAATCATAACTCAAGATGGAAACAAGACCTTGCGTTTAC
* * * * *
15177 TCAAAACTTGAACTCATGGCCACGATTGCAGCAAATCTTACACTTGGTTTCT
65 TC-AGACTTGAACCCATGACCACGATTGCAGCAAATCTTACACTCGGTTTCC
* *
15229 TACCACTATGGGGTGTGTCAAGAGTGAATCATAACTCAAGATGGAAACAAGATCTTGCGTTTACT
1 TGCCACTATGGGGTGTGTCAAGAGTGAATCATAACTCAAGATGGAAACAAGACCTTGCGTTTACT
* * * *
15294 CAGACTCGAACCCATGACCACGCTTGCAGCAAACCTTACACTCGGCTTCC
66 CAGACTTGAACCCATGACCACGATTGCAGCAAATCTTACACTCGGTTTCC
* * *
15344 TGCCACTATGGGGCGTGCCAAGAGTGAATCATAACTCAAGATGGAAACAAGGCCTTGCGTTTACT
1 TGCCACTATGGGGTGTGTCAAGAGTGAATCATAACTCAAGATGGAAACAAGACCTTGCGTTTACT
* * *
15409 CAGACTTGAACCCATGATCACGTTTACAGCAAATCTTACACTCGGTTTCC
66 CAGACTTGAACCCATGACCACGATTGCAGCAAATCTTACACTCGGTTTCC
15459 TGCCACTA
1 TGCCACTA
15467 AATCACTCCT
Statistics
Matches: 212, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
115 152 0.72
116 54 0.25
117 6 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (115 bp):
TGCCACTATGGGGTGTGTCAAGAGTGAATCATAACTCAAGATGGAAACAAGACCTTGCGTTTACT
CAGACTTGAACCCATGACCACGATTGCAGCAAATCTTACACTCGGTTTCC
Found at i:24437 original size:2 final size:2
Alignment explanation
Indices: 24432--24456 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24422 TATATGTGCT
24432 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
24457 TGCATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:34134 original size:2 final size:2
Alignment explanation
Indices: 34127--34205 Score: 70
Period size: 2 Copynumber: 40.0 Consensus size: 2
34117 AGACTGCACT
* * * * *
34127 GA GA GA GA GA GA GA GA G- GG GA GG GG GG GG GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
34168 GA GA TA GA GA GA GA GA GA GC GT GT GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
34206 TTATATATCA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
1 1 0.01
2 67 0.99
ACGTcount: A:0.39, C:0.01, G:0.56, T:0.04
Consensus pattern (2 bp):
GA
Found at i:55534 original size:3 final size:3
Alignment explanation
Indices: 55526--55564 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
55516 TGAAGGGGAG
* *
55526 GAA GAA GAA GAA GTA GAA GAA GAA GAA TAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
55565 AGTATAGAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (3 bp):
GAA
Found at i:56542 original size:5 final size:5
Alignment explanation
Indices: 56526--56554 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
56516 TGGGGGCCTG
56526 CTGGC C-GGC CTGGC CTGGC CTGGC CTGGC
1 CTGGC CTGGC CTGGC CTGGC CTGGC CTGGC
56555 ACCAAACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.00, C:0.41, G:0.41, T:0.17
Consensus pattern (5 bp):
CTGGC
Found at i:57518 original size:3 final size:3
Alignment explanation
Indices: 57512--57539 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
57502 AGTAGTATAT
57512 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
57540 ATAAGTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:58541 original size:2 final size:2
Alignment explanation
Indices: 58536--58569 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
58526 AACTATTTAG
* *
58536 AT AT AT AT AT AT AT AT AT AT AT TT AG AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58570 GTTAAAGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58558 original size:26 final size:26
Alignment explanation
Indices: 58519--58569 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
58509 AATCTCTCTC
58519 TATATATAACTATTTAGATATATATA
1 TATATATAACTATTTAGATATATATA
58545 TATATATATA-TATTTAGATATATAT
1 TATATATA-ACTATTTAGATATATAT
58570 GTTAAAGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (26 bp):
TATATATAACTATTTAGATATATATA
Found at i:69832 original size:20 final size:20
Alignment explanation
Indices: 69807--69846 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
69797 AATTACAAAC
*
69807 AAACTCACATTCCGTGAGAG
1 AAACTCACATTCCATGAGAG
69827 AAACTCACATTCCATGAGAG
1 AAACTCACATTCCATGAGAG
69847 TTGAACCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
AAACTCACATTCCATGAGAG
Found at i:78472 original size:4 final size:4
Alignment explanation
Indices: 78463--78498 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
78453 ACTTTTTATC
* *
78463 ATTT ATTT ATTT ATTT ATTT ATTT ATCT ATTC ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
78499 TTTCTATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:88843 original size:2 final size:2
Alignment explanation
Indices: 88836--88860 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
88826 ACATTTATAC
88836 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
88861 GTCTTTGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:89349 original size:2 final size:2
Alignment explanation
Indices: 89342--89372 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
89332 GTAGGTAACT
*
89342 TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
89373 TCCCATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:111013 original size:103 final size:106
Alignment explanation
Indices: 110839--111098 Score: 368
Period size: 105 Copynumber: 2.5 Consensus size: 106
110829 AATTTTTCTA
* ** * *
110839 ACCCTTAAAATAAAATTTTAATTTTAATTT-AGGTTAAACTTAGTG-AATTAGTTATATATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTATATATTTTA
* *
110902 TTTCTAAAACCCTATAACAAT-ATTATTAATTATGGAATTT
66 TTTCTAAAACCATATAACAATAATTATTAATTATGAAATTT
* *
110942 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTGTATTTT-
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTATATATTTTA
*
111006 TTT-TAAAACCATATAACAATAAATTATTAATTTTGAAATTT
66 TTTCTAAAACCATATAACAAT-AATTATTAATTATGAAATTT
* *
111047 GCCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAATTTAGTGAAATTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTA
111099 AGGTTAAACT
Statistics
Matches: 141, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
103 43 0.30
104 16 0.11
105 82 0.58
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (106 bp):
ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTATATATTTTA
TTTCTAAAACCATATAACAATAATTATTAATTATGAAATTT
Found at i:111592 original size:107 final size:105
Alignment explanation
Indices: 111335--111593 Score: 402
Period size: 102 Copynumber: 2.5 Consensus size: 105
111325 AATTTTTCTA
* **
111335 ACCCTTAAAATAAAATTTCAATTTTAATTT-GGACTAAACTTAGTG-AATTAGTTATATATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGACTAAACTTAGTGAAATTAGTTATATATTTTA
*
111398 TTTCTAAAACCCTATAACAATATTATTAATTATGGAATTT
66 TTTCTAAAACCCTATAACAATATTATTAATTATGAAATTT
*
111438 ACCCTTAAAATAAAAA-AAAA--TTAATTTGGGACTAAACTTAGTGAAATTAGTTTTATATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGACTAAACTTAGTGAAATTAGTTATATATTTTA
*
111500 TTTCTAAAACCCTATAACAATAAATTATTAATTTTGAAATTT
66 TTTCTAAAACCCTATAACAAT--ATTATTAATTATGAAATTT
*
111542 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGACTAAATTTAGTGAAATTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGACTAAACTTAGTGAAATTA
111594 AGGCTAAACT
Statistics
Matches: 142, Mismatches: 7, Indels: 10
0.89 0.04 0.06
Matches are distributed among these distances:
100 7 0.05
101 15 0.11
102 40 0.28
103 15 0.11
104 33 0.23
105 4 0.03
107 28 0.20
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (105 bp):
ACCCTTAAAATAAAAATAAAATTTTAATTTGGGACTAAACTTAGTGAAATTAGTTATATATTTTA
TTTCTAAAACCCTATAACAATATTATTAATTATGAAATTT
Found at i:111631 original size:11 final size:10
Alignment explanation
Indices: 111608--111641 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
111598 TAAACTTAAT
111608 AAAAAGAATAA
1 AAAAAGAA-AA
*
111619 AAATAGAAAA
1 AAAAAGAAAA
111629 AAAAAGAAAA
1 AAAAAGAAAA
111639 AAA
1 AAA
111642 GAAAGGAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.67
11 7 0.33
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:111744 original size:13 final size:13
Alignment explanation
Indices: 111723--111758 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
111713 GATAATTCTT
111723 TTTGACCCTCCAA
1 TTTGACCCTCCAA
*
111736 TTTGTCCCTCCAA
1 TTTGACCCTCCAA
*
111749 CTTGACCCTC
1 TTTGACCCTC
111759 TTAATAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.17, C:0.42, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTGACCCTCCAA
Found at i:111820 original size:40 final size:40
Alignment explanation
Indices: 111760--111838 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
111750 TTGACCCTCT
* *
111760 TAATAATTAAGGAAATAAATTAAATTCAGGTTTAGCCCCC
1 TAATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCCCC
*
111800 TAATAATTAAGGTAAGAAATTAAATCCAGGTTTAGCCCC
1 TAATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCCC
111839 TAGTTATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (40 bp):
TAATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCCCC
Found at i:111956 original size:13 final size:13
Alignment explanation
Indices: 111938--111969 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
111928 TGACACGTCA
111938 GGAGGGACAAATT
1 GGAGGGACAAATT
*
111951 GGAGGGACAAGTT
1 GGAGGGACAAATT
111964 GGAGGG
1 GGAGGG
111970 TCATGTAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.50, T:0.12
Consensus pattern (13 bp):
GGAGGGACAAATT
Found at i:113211 original size:24 final size:24
Alignment explanation
Indices: 113184--113232 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
113174 TAATATAGAA
*
113184 GGCCATGAATAAGAATTTATAAAT
1 GGCCACGAATAAGAATTTATAAAT
*
113208 GGCCACGTATAAGAATTTATAAAT
1 GGCCACGAATAAGAATTTATAAAT
113232 G
1 G
113233 TTACAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.29
Consensus pattern (24 bp):
GGCCACGAATAAGAATTTATAAAT
Found at i:117279 original size:52 final size:53
Alignment explanation
Indices: 117200--117302 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 53
117190 CATTTTGGGT
117200 GGAAACTTAAGGAGTTAAAATGGCAAAGTTATTATTAATGCGGGGTTGGATGG
1 GGAAACTTAAGGAGTTAAAATGGCAAAGTTATTATTAATGCGGGGTTGGATGG
*
117253 GGAAACTTTA-GAGTTAAAATGGCAAAGTTATTATTAATGCGGGGTTGGAT
1 GGAAACTTAAGGAGTTAAAATGGCAAAGTTATTATTAATGCGGGGTTGGAT
117303 AAGTAATAAG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 40 0.82
53 9 0.18
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (53 bp):
GGAAACTTAAGGAGTTAAAATGGCAAAGTTATTATTAATGCGGGGTTGGATGG
Found at i:123633 original size:29 final size:30
Alignment explanation
Indices: 123584--123644 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 30
123574 TAGGGGACTG
*
123584 AATGTCTTGAATTTGGAAGTTCATGAGGTAA
1 AATGTCATGAATTTGGAAGTTCA-GAGGTAA
123615 AATGTCATG-ATTT-GAAGTTCAGAGGTAA
1 AATGTCATGAATTTGGAAGTTCAGAGGTAA
123643 AA
1 AA
123645 CATTCTTGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 9 0.31
29 8 0.28
30 4 0.14
31 8 0.28
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.33
Consensus pattern (30 bp):
AATGTCATGAATTTGGAAGTTCAGAGGTAA
Done.