Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016650.1 Corchorus olitorius cultivar O-4 contig16683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146578

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7664--7710
18
2.6
18
83
6
60
53
6
21
19
1.67
12114--12152
19
2.1
19
100
0
78
51
28
0
20
1.48
12181--12278
49
2.0
49
97
0
187
26
21
24
27
1.99
13008--13164
80
2.0
80
96
0
287
25
33
9
31
1.88
14718--14758
21
1.9
22
85
5
57
43
29
17
9
1.80
16171--16221
24
2.2
23
86
13
70
41
25
0
33
1.56
16297--16321
13
1.9
13
100
0
50
44
16
8
32
1.76
21321--21363
18
2.4
18
100
0
86
30
23
20
25
1.99
24823--24857
3
11.7
3
93
0
61
65
0
31
2
1.07
27463--27507
21
2.1
21
83
0
54
35
6
17
40
1.76
33569--33819
135
1.9
136
93
2
434
23
19
13
44
1.85
34115--34162
19
2.5
19
96
0
87
14
16
39
29
1.88
37441--37465
12
2.1
12
100
0
50
60
8
24
8
1.52
40052--40103
21
2.5
21
87
0
77
13
21
46
19
1.84
44260--44299
20
1.9
22
85
10
57
62
5
22
10
1.46
47973--48052
18
4.4
18
100
0
160
0
45
26
28
1.54
49785--49862
28
2.8
29
82
5
88
37
10
16
35
1.83
50923--50993
32
2.3
30
86
9
106
12
46
33
7
1.69
50929--50982
17
3.3
17
69
10
58
12
44
33
9
1.75
57252--57378
62
2.0
62
86
3
175
30
11
25
31
1.92
57474--57508
17
2.1
17
89
10
54
22
14
5
57
1.59
59854--59905
17
3.1
17
75
10
52
17
7
9
65
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60544--60578
2
17.5
2
93
0
61
45
0
2
51
1.16
64803--64842
3
13.7
3
84
5
55
32
2
0
65
1.06
67759--67841
42
2.0
42
95
0
148
33
4
19
42
1.72
69714--69766
22
2.4
22
87
3
70
45
11
9
33
1.72
72041--72097
17
3.4
17
87
4
80
26
26
19
28
1.99
80466--80510
19
2.6
18
86
10
58
2
11
2
84
0.80
80462--80518
24
2.4
24
75
18
64
1
14
3
80
0.92
80474--80510
19
1.9
19
94
0
65
2
10
2
83
0.84
80468--80517
25
2.0
25
84
11
66
2
12
4
82
0.90
82987--83111
65
1.9
64
83
4
162
20
24
28
26
1.99
84283--84323
21
2.0
21
85
9
57
34
9
26
29
1.88
84733--84775
21
2.0
22
81
4
52
39
11
30
18
1.86
93399--93510
57
2.0
57
87
3
163
38
8
16
35
1.81
96842--96871
12
2.5
12
94
0
51
53
13
20
13
1.72
102163--102335
23
7.7
23
84
3
201
50
23
5
20
1.69
106573--106611
20
2.0
20
100
0
78
41
23
5
30
1.76
107493--107554
22
2.8
22
95
0
106
32
14
12
40
1.84
110020--110057
20
1.9
20
88
0
58
52
5
34
7
1.53
113449--113476
2
14.0
2
100
0
56
50
0
0
50
1.00
121687--121797
38
2.9
38
89
6
156
29
21
13
35
1.92
123982--124007
11
2.4
11
100
0
52
7
15
7
69
1.35
125085--125149
33
2.0
33
88
8
98
33
9
7
49
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129151--129176
11
2.4
11
100
0
52
7
15
7
69
1.35
133190--133330
69
2.0
69
91
0
228
28
28
17
25
1.98
133441--133768
47
7.0
47
86
2
453
19
22
20
37
1.95
133782--133988
22
9.2
22
71
15
104
28
22
5
43
1.74
133804--134024
36
6.0
36
78
14
209
28
22
5
43
1.75
133779--134003
14
15.2
14
66
24
74
29
22
4
43
1.74
133976--134035
22
2.7
22
84
0
75
30
21
3
45
1.68
134006--134350
56
6.1
56
95
0
582
26
21
12
39
1.89
134357--134444
36
2.4
36
84
0
113
22
14
17
45
1.85
138248--138276
15
1.9
15
100
0
58
72
6
6
13
1.26
142103--142144
15
2.7
15
92
3
66
64
14
9
11
1.50
143684--143713
15
2.1
15
93
6
53
63
6
16
13
1.50
144070--144117
20
2.3
20
85
3
60
12
22
47
16
1.80
144358--144397
21
1.9
21
85
10
55
20
20
55
5
1.62

Tables:   1

The End!