Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016652.1 Corchorus olitorius cultivar O-4 contig16685, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75049

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1749--2854
30
36.1
30
84
8
1194
48
17
14
20
1.81
1749--2854
60
18.0
60
87
6
1356
48
17
14
20
1.81
2593--2669
38
2.0
38
85
5
102
49
16
16
16
1.80
2559--2787
62
3.5
68
87
9
283
48
17
15
18
1.82
2719--2926
39
5.9
38
73
19
134
47
18
15
18
1.83
2723--2935
69
3.0
68
88
4
300
47
18
15
18
1.83
2964--3416
168
2.7
169
87
3
643
34
15
19
29
1.93
3312--3619
102
3.0
102
87
5
462
39
12
17
29
1.87
3920--4320
35
11.4
35
82
0
460
40
18
22
18
1.91
4614--4646
12
2.6
13
85
9
50
3
24
9
63
1.38
5514--5546
6
5.7
6
96
3
59
12
0
15
72
1.12
5561--5612
14
3.6
15
79
7
63
9
1
9
78
1.03
5886--5923
15
2.7
15
88
8
53
39
10
5
44
1.61
8861--8891
16
1.9
16
93
0
53
22
12
25
38
1.90
12923--12954
17
1.9
17
93
6
57
12
6
6
75
1.19
25798--26265
234
2.0
234
97
0
884
30
27
8
33
1.87
29094--29136
22
2.0
22
95
0
77
39
20
11
27
1.88
29260--29352
47
2.0
45
91
4
150
31
32
18
18
1.95
31909--31948
19
2.0
20
90
4
64
22
32
15
30
1.94
32004--32038
13
2.7
13
90
0
52
17
17
20
45
1.85
32202--32336
18
8.3
18
68
26
79
5
25
20
48
1.71
32173--32352
47
3.8
47
87
2
263
6
25
20
48
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36884--36943
22
2.7
21
80
14
59
38
11
10
40
1.75
36928--36988
22
2.8
22
84
0
86
44
9
8
37
1.68
36862--36987
66
1.9
65
82
9
157
40
9
10
39
1.72
37046--37073
2
14.0
2
100
0
56
50
0
0
50
1.00
43889--43931
21
2.0
22
90
4
70
41
6
11
39
1.68
47106--47135
15
1.9
16
93
6
53
6
3
6
83
0.90
54260--54305
21
2.2
20
84
3
65
15
43
2
39
1.59
56957--56999
19
2.3
19
83
0
50
37
25
16
20
1.93
58200--58248
22
2.1
23
88
7
73
36
20
2
40
1.64
72756--72793
11
3.5
11
89
10
51
39
0
2
57
1.12
73892--73985
45
2.2
44
86
7
131
40
21
3
35
1.69
74947--74983
2
18.0
2
94
5
65
48
0
2
48
1.15

Tables:   1

The End!