Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016654.1 Corchorus olitorius cultivar O-4 contig16687, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69821

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3341--3378
19
2.0
19
100
0
76
52
15
5
26
1.64
4041--4134
45
2.2
44
86
7
131
39
20
5
35
1.75
5786--5815
2
15.0
2
92
0
51
50
3
0
46
1.18
5880--5919
20
2.0
20
95
0
71
22
20
22
35
1.96
6605--6715
54
2.1
54
98
0
213
48
11
9
30
1.70
7169--7238
35
2.0
35
100
0
140
37
17
22
22
1.94
14795--14881
28
3.1
28
67
26
76
35
16
21
26
1.94
14793--14901
55
2.0
55
92
0
182
35
16
21
26
1.94
16195--16239
18
2.5
18
89
7
65
37
26
2
33
1.69
16551--16614
28
2.3
28
81
7
69
18
14
28
39
1.90
16598--16668
26
2.7
27
84
2
99
16
15
26
40
1.89
19393--19486
41
2.3
41
85
3
118
22
13
14
48
1.79
20630--20664
17
2.0
18
88
5
54
77
5
11
5
1.12
28304--28438
72
1.9
73
85
1
191
23
26
22
27
1.99
28377--28675
95
3.2
95
79
9
380
24
24
23
27
2.00
29142--29444
147
2.1
147
90
0
471
20
22
29
28
1.98
29881--29921
21
2.0
21
85
4
57
29
17
17
36
1.92
30642--30680
15
2.5
16
91
4
62
64
12
7
15
1.49
35403--35704
40
7.9
39
78
14
274
35
15
15
32
1.90
35403--35704
37
7.9
37
77
13
244
35
15
15
32
1.90
39295--39341
20
2.3
20
96
0
85
51
8
10
29
1.66
39957--39982
11
2.4
11
100
0
52
26
0
7
65
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42707--42815
29
3.8
29
91
2
157
33
30
11
23
1.91
42909--43092
42
4.4
41
70
10
111
23
25
15
35
1.94
42911--43092
84
2.2
83
83
5
233
24
25
15
35
1.94
44056--44085
14
2.1
14
100
0
60
73
6
6
13
1.24
50809--50877
31
2.2
30
82
12
86
27
10
7
55
1.60
51224--51265
15
2.7
15
88
3
57
69
9
9
11
1.38
52634--52694
29
2.0
30
87
6
88
34
18
8
39
1.80
52663--52695
11
2.8
12
81
9
50
36
18
9
36
1.82
54691--54730
15
2.6
15
96
4
71
12
7
15
65
1.47
55910--55953
18
2.4
19
81
11
56
34
29
4
31
1.78
56312--56734
93
4.5
96
83
6
544
26
24
21
27
1.99
56318--56797
187
2.6
188
89
1
703
26
23
21
28
1.99
56561--56890
94
3.5
94
80
3
279
23
24
20
31
1.98
57035--57338
147
2.1
148
89
0
457
22
21
27
28
1.99
57768--57807
21
2.0
21
85
5
55
32
17
12
37
1.87
59780--59873
30
3.2
30
96
1
172
13
14
31
39
1.86
59999--60052
27
2.0
27
89
7
83
37
11
16
35
1.84
62201--62534
173
1.9
173
98
0
650
29
17
17
35
1.94
68000--68276
124
2.2
124
86
2
369
25
26
23
24
2.00
68000--68311
124
2.5
124
83
4
342
24
26
25
24
2.00

Tables:   1

The End!