genome.fa.s16655.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016655.1 Corchorus olitorius cultivar O-4 contig16688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107576

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763--894	35	3.7	35	89	5	212	28	22	19	29	1.98
763--896	70	1.9	71	96	1	252	28	22	20	29	1.98
978--1566	50	11.8	50	95	0	1036	29	13	27	30	1.94
2169--2316	50	3.0	50	88	0	215	37	12	15	34	1.85
2906--2957	6	8.7	6	79	12	54	15	0	13	71	1.15
2918--2977	14	4.5	13	74	14	50	16	1	11	70	1.25
2936--2961	12	2.2	12	100	0	52	7	0	7	84	0.77
3340--3383	22	2.0	21	87	12	63	11	13	0	75	1.06
3343--3384	15	2.8	15	79	10	50	11	16	0	71	1.14
7104--7264	41	3.9	41	89	0	223	44	12	16	26	1.83
7104--7264	82	2.0	82	91	0	259	44	12	16	26	1.83
18898--18943	23	2.0	23	95	0	83	21	28	17	32	1.96
31693--31757	27	2.4	27	78	0	76	38	24	16	20	1.93
32738--32812	33	2.2	34	90	2	116	49	5	28	17	1.68
32842--32901	31	1.9	31	96	0	111	28	20	11	40	1.87
33479--33516	2	19.0	2	88	0	58	50	5	0	44	1.24
33478--33516	10	3.9	10	93	0	69	48	7	0	43	1.31
38311--38346	19	1.9	18	88	5	54	41	8	22	27	1.82
38299--38358	30	2.0	30	83	6	77	41	8	18	31	1.80
39875--39918	13	3.4	13	81	9	54	13	15	2	68	1.31
45756--45833	22	3.5	22	77	18	81	42	15	23	19	1.89
47486--47519	17	2.0	17	88	0	50	44	5	11	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48342--48377	19	1.9	18	88	5	54	41	8	22	27	1.82
48330--48389	30	2.0	30	83	6	77	41	8	18	31	1.80
49990--50070	30	2.7	31	76	17	82	35	0	35	28	1.58
61158--61187	5	6.0	5	92	0	51	0	36	0	63	0.95
61159--61187	15	1.9	15	100	0	58	0	34	0	65	0.93
68146--68180	17	2.0	18	88	5	54	37	0	0	62	0.95
68314--68340	13	2.1	13	100	0	54	40	0	14	44	1.46
70947--71005	23	2.7	21	87	7	57	38	25	5	30	1.77
70957--71005	23	2.1	23	96	0	89	38	24	6	30	1.80
76026--76066	20	2.0	20	90	0	64	43	26	12	17	1.84
80367--80511	40	3.6	40	93	2	229	37	6	26	28	1.81
81625--81755	59	2.2	58	81	5	147	19	36	6	37	1.78
81945--81989	18	2.5	18	100	0	90	46	35	0	17	1.49
86324--86350	11	2.5	11	100	0	54	0	0	11	88	0.50
91985--92012	12	2.3	12	100	0	56	39	28	7	25	1.82
100811--100841	16	1.9	16	93	0	53	58	6	6	29	1.48
101215--101270	26	2.2	26	90	0	85	25	41	3	30	1.72
103851--103890	2	20.0	2	100	0	80	50	0	0	50	1.00
104086--104126	13	3.0	14	89	7	57	46	9	12	31	1.74
106666--106710	3	13.7	3	90	9	54	62	0	0	37	0.96
106777--106823	3	16.0	3	91	4	78	65	0	0	34	0.93
107005--107119	45	2.6	45	91	1	187	35	23	7	33	1.84

Tables:   1

The End!