Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016657.1 Corchorus olitorius cultivar O-4 contig16690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20012

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
312--354
15
2.9
15
83
10
52
53
0
2
44
1.13
314--355
9
4.7
9
77
11
50
54
0
2
42
1.13
318--368
24
2.1
24
85
0
66
49
0
5
45
1.26
5463--5498
14
2.6
14
95
4
65
44
11
19
25
1.83
11775--11800
6
4.3
6
100
0
52
80
0
0
19
0.71
15591--15615
13
1.9
13
100
0
50
84
0
0
16
0.63
19082--19180
49
2.1
48
84
3
128
48
20
17
14
1.81
19541--19580
17
2.4
17
86
0
53
27
0
2
70
1.01

Tables:   1

The End!