Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016662.1 Corchorus olitorius cultivar O-4 contig16695, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37951

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7787--7880
49
1.9
49
91
0
152
35
9
8
46
1.67
10736--10841
40
2.6
40
89
5
151
19
24
16
39
1.91
14452--14486
11
3.2
11
83
0
52
77
17
5
0
0.96
14457--14515
16
3.7
16
72
17
50
69
18
10
1
1.25
18511--18691
88
2.1
88
92
2
301
36
8
16
38
1.80
18115--19085
483
2.0
482
93
1
1667
37
12
17
33
1.87
21851--21936
45
1.9
45
80
4
102
41
6
5
45
1.55
24775--24878
38
2.6
39
87
9
147
22
23
15
39
1.91
30466--30517
18
3.1
18
69
25
58
32
17
17
32
1.93
30453--30578
33
3.8
33
85
4
164
27
21
16
34
1.95

Tables:   1

The End!