Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016663.1 Corchorus olitorius cultivar O-4 contig16696, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75206

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5890--5932
22
2.1
19
87
12
59
16
32
13
37
1.88
14665--14733
30
2.3
30
92
5
113
33
36
18
11
1.87
15198--15277
33
2.4
33
89
0
115
38
5
21
35
1.75
16278--16323
23
2.0
22
84
12
58
4
19
2
73
1.10
16310--16334
9
2.8
9
100
0
50
0
8
8
84
0.79
23186--23218
15
2.2
15
100
0
66
48
0
24
27
1.51
24467--24506
20
2.0
21
90
5
64
27
0
5
67
1.11
24540--24582
22
1.9
23
95
4
79
25
23
13
37
1.92
25280--25356
30
2.5
30
87
2
118
27
9
27
36
1.87
28219--28261
22
1.9
23
95
4
79
25
23
13
37
1.92
35491--36262
41
18.8
39
77
10
432
37
22
23
16
1.94
35494--36338
82
10.3
82
84
6
874
37
21
23
17
1.94
35493--36379
123
7.2
121
79
8
783
37
21
23
17
1.94
35616--36393
41
18.9
41
84
5
829
36
21
23
18
1.95
39733--39781
25
2.0
25
95
0
89
12
30
20
36
1.89
43685--43715
2
15.5
2
100
0
62
48
0
0
51
1.00
43806--43856
23
2.2
23
96
0
93
39
29
13
17
1.88
48395--48434
19
2.2
19
90
4
64
30
20
5
45
1.72
63875--64896
438
2.3
434
84
3
1280
43
13
13
30
1.82
67510--67596
15
5.7
15
90
2
120
31
12
11
44
1.78

Tables:   1

The End!