Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016665.1 Corchorus olitorius cultivar O-4 contig16698, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3888
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27


Found at i:3057 original size:7 final size:7

Alignment explanation


    Indices: 3047--3071  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       3037 TTTTTTTATT

                   
       3047 CTTTTTC
          1 CTTTTTC

                   
       3054 CTTTTTC
          1 CTTTTTC

                   
       3061 CTTTTTC
          1 CTTTTTC

                
       3068 CTTT
          1 CTTT

       3072 CTTTTTTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72


Consensus pattern (7 bp):   
CTTTTTC
Done.