Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016666.1 Corchorus olitorius cultivar O-4 contig16699, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1875
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39


Found at i:1718 original size:2 final size:2

Alignment explanation


    Indices: 1713--1783  Score: 142
    Period size: 2  Copynumber: 35.5  Consensus size: 2

       1703 TATATATATA

                                                                          
       1713 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

                                                       
       1755 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T

       1784 CTATCAATGT


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   69  1.00

ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51


Consensus pattern (2 bp):   
TG

Done.