Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016672.1 Corchorus olitorius cultivar O-4 contig16705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4605
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32


Found at i:86 original size:27 final size:25

Alignment explanation


    Indices: 56--105  Score: 64
    Period size: 25  Copynumber: 1.9  Consensus size: 25

         46 TTTTGTAGTA

                                       
         56 TTGAAATTTCGGTTTTGAAACCAAAGC
          1 TTGAAATTTC--TTTTGAAACCAAAGC

                 *           *     
         83 TTGAATTTTCTTTTGAACCCAAA
          1 TTGAAATTTCTTTTGAAACCAAA

        106 TTCTTGAATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  25   12  0.57
  27    9  0.43

ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38


Consensus pattern (25 bp):   
TTGAAATTTCTTTTGAAACCAAAGC

Found at i:316 original size:10 final size:9

Alignment explanation


    Indices: 302--335  Score: 50
    Period size: 9  Copynumber: 3.7  Consensus size: 9

        292 ACAAAACAAC

                     
        302 AAAAAAATA
          1 AAAAAAATA

                      
        311 ATAAAAAATA
          1 A-AAAAAATA

              *      
        321 AATAAAATA
          1 AAAAAAATA

                  
        330 AAAAAA
          1 AAAAAA

        336 GAATGTCACG


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
   9   13  0.59
  10    9  0.41

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (9 bp):   
AAAAAAATA
Done.