genome.fa.s16674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016674.1 Corchorus olitorius cultivar O-4 contig16707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63013

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005--1055	24	2.1	25	85	3	68	17	5	5	70	1.28
5351--5431	30	2.7	31	78	17	91	34	0	37	28	1.58
11113--11293	10	18.1	10	83	6	215	48	4	7	39	1.52
16490--16539	22	2.3	22	82	6	57	40	10	10	40	1.72
23305--23336	13	2.5	13	100	0	64	12	25	40	21	1.88
23814--23870	30	1.9	29	89	10	89	21	14	5	59	1.54
25431--25466	19	1.9	18	88	5	54	41	8	22	27	1.82
45184--45248	14	4.8	13	83	12	78	44	9	9	36	1.68
45491--45527	6	6.0	6	93	6	65	83	0	16	0	0.64
45894--45948	18	3.2	16	80	10	65	80	3	16	0	0.86
45894--45947	22	2.5	22	85	11	76	79	3	16	0	0.87
45890--45948	12	5.1	12	76	13	61	77	5	16	0	0.93
45899--45962	23	2.8	23	81	9	78	75	4	18	1	1.06
46082--46250	87	2.0	86	93	1	293	33	11	27	27	1.92
47043--47542	37	13.6	37	77	6	401	25	17	14	43	1.85
47033--47530	74	6.8	74	81	6	456	25	16	14	43	1.86
47046--47396	112	3.2	110	81	6	404	24	17	13	43	1.86
47263--47342	35	2.3	35	91	0	124	26	20	12	41	1.87
47562--47917	54	6.6	54	82	2	380	26	16	22	35	1.94
47559--47855	162	1.8	163	86	0	434	25	16	21	36	1.94
47559--47917	162	2.2	162	83	5	433	26	16	22	35	1.94
47886--47958	33	2.2	33	80	0	83	24	16	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47921--48069	54	2.7	55	87	2	210	26	18	22	32	1.97
47917--48085	54	3.1	54	82	8	200	27	16	21	34	1.95
48125--48390	7	38.0	7	96	0	424	56	25	0	18	1.44
51538--51597	19	3.3	19	64	17	54	36	31	11	20	1.88
51538--51619	36	2.2	38	93	4	141	37	30	13	18	1.89
53504--53572	25	2.8	23	77	14	68	73	11	7	7	1.23

Tables:   1

The End!