Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016676.1 Corchorus olitorius cultivar O-4 contig16709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2263
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33


Found at i:303 original size:30 final size:30

Alignment explanation


    Indices: 267--328  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        257 TGGTTTTGAG

                                          
        267 AGGGAGTCGTTCAGTCTCTGGGGGATGCCC
          1 AGGGAGTCGTTCAGTCTCTGGGGGATGCCC

                                          
        297 AGGGAGTCGTTCAGTCTCTGGGGGATGCCC
          1 AGGGAGTCGTTCAGTCTCTGGGGGATGCCC

              
        327 AG
          1 AG

        329 CTACTGCTTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.15, C:0.23, G:0.40, T:0.23


Consensus pattern (30 bp):   
AGGGAGTCGTTCAGTCTCTGGGGGATGCCC
Done.