Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016681.1 Corchorus olitorius cultivar O-4 contig16714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3429
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39


Found at i:3362 original size:22 final size:22

Alignment explanation


    Indices: 3334--3375  Score: 84
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       3324 ACTGAATATT

                                  
       3334 TCCAAATCAAAATCAATTTTTA
          1 TCCAAATCAAAATCAATTTTTA

                                
       3356 TCCAAATCAAAATCAATTTT
          1 TCCAAATCAAAATCAATTTT

       3376 CATTACTGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36


Consensus pattern (22 bp):   
TCCAAATCAAAATCAATTTTTA
Done.