Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016682.1 Corchorus olitorius cultivar O-4 contig16715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4485
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Found at i:1690 original size:13 final size:12

Alignment explanation


    Indices: 1668--1724  Score: 51
    Period size: 13  Copynumber: 4.5  Consensus size: 12

       1658 TCATGCACCC

                         
       1668 AAAACAATTTATT
          1 AAAACAATTTA-T

                 *      
       1681 AAAACCATTTAT
          1 AAAACAATTTAT

                    * *  
       1693 AAAACATACTAAT
          1 AAAACA-ATTTAT

                      *  
       1706 AAAACATATTAAT
          1 AAAACA-ATTTAT

                  
       1719 AAAACA
          1 AAAACA

       1725 GTTCCTCAAC


Statistics
Matches: 38,  Mismatches: 5, Indels: 2
        0.84            0.11        0.04

Matches are distributed among these distances:
  12    6  0.16
  13   32  0.84

ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28


Consensus pattern (12 bp):   
AAAACAATTTAT
Done.