Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016683.1 Corchorus olitorius cultivar O-4 contig16716, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2822
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41


Found at i:2148 original size:67 final size:66

Alignment explanation


    Indices: 2035--2224  Score: 260
    Period size: 67  Copynumber: 2.8  Consensus size: 66

       2025 TATATATTAA

                                                                             
       2035 ATTGATTGATTGATTTGAATATATTTTGATCCAATTAGAATCAATTAGTACTAAAATGATATT-A
          1 ATTGATTGATTGATTTG-A-ATA-TTTGATCCAATTAGAATCAATTAGTACT--AATGATATTAA

                  
       2099 A-ATTG
         61 ATATTG

                                                                             
       2104 ATTGATTGATTGATTTGAATATCTTGATCCAATTAGAATCAATTAGTACTAATGATATTAAATTG
          1 ATTGATTGATTGATTTGAATAT-TTGATCCAATTAGAATCAATTAGTACTAATGATATTAAA-T-

                
       2169 ATTG
         63 ATTG

                                        *     *            *     
       2173 ATTGATTGATTGATTTGAATA-TTGATCAAATTAAAATCAATTAGTATTAATG
          1 ATTGATTGATTGATTTGAATATTTGATCCAATTAGAATCAATTAGTACTAATG

       2225 TCATTTAATT


Statistics
Matches: 113,  Mismatches: 3, Indels: 12
        0.88            0.02        0.09

Matches are distributed among these distances:
  65    9  0.08
  66    3  0.03
  67   58  0.51
  68    1  0.01
  69   42  0.37

ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42


Consensus pattern (66 bp):   
ATTGATTGATTGATTTGAATATTTGATCCAATTAGAATCAATTAGTACTAATGATATTAAATATT
G

Done.