Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016686.1 Corchorus olitorius cultivar O-4 contig16719, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9791

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1659--1774
57
2.0
57
91
3
189
38
1
25
33
1.66
2378--2439
31
2.0
31
90
0
97
29
24
6
40
1.80
2474--2642
93
1.8
93
94
0
302
31
12
3
52
1.56
3304--3351
9
5.8
9
81
18
68
6
6
37
50
1.53
3300--3358
16
3.7
16
100
0
118
5
5
40
49
1.47
3300--3361
7
8.0
7
80
19
70
4
4
38
51
1.45
4123--4162
19
2.2
18
95
4
71
75
0
25
0
0.81
4129--4188
19
3.2
18
81
9
59
73
0
26
0
0.84
4119--4187
6
11.3
6
76
18
54
71
0
28
0
0.87
5591--5647
12
4.8
11
73
14
51
35
3
10
50
1.54
7242--7532
155
1.9
151
90
2
456
38
7
2
50
1.46

Tables:   1

The End!