Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001669.1 Corchorus olitorius cultivar O-4 contig01669, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:306 original size:24 final size:23

Alignment explanation


    Indices: 274--330  Score: 66
    Period size: 20  Copynumber: 2.6  Consensus size: 23

        264 GCCTTATACA

                            **      
        274 CAAACTAATGATATGTTTAGGATT
          1 CAAACTAATGATATGTACA-GATT

                                   
        298 CAAACTAATG---TGTACAGATT
          1 CAAACTAATGATATGTACAGATT

                         
        318 CAAACTAATGATA
          1 CAAACTAATGATA

        331 AACAATTTTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 7
        0.76            0.05        0.19

Matches are distributed among these distances:
  20   14  0.50
  21    4  0.14
  24   10  0.36

ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32


Consensus pattern (23 bp):   
CAAACTAATGATATGTACAGATT
Done.