Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016692.1 Corchorus olitorius cultivar O-4 contig16725, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52738

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3120--3210
8
9.9
9
72
19
55
6
17
0
75
1.00
3156--3209
22
2.3
22
84
12
63
5
18
0
75
0.98
5808--5859
9
5.9
9
80
11
54
7
17
0
75
1.03
5795--5857
24
2.6
25
82
5
67
7
14
1
76
1.08
11184--11253
25
2.8
25
91
2
88
4
30
42
22
1.73
11194--11253
25
2.4
25
97
0
111
3
28
45
23
1.69
11276--11358
6
13.8
6
97
0
121
0
43
6
50
1.26
12923--12960
20
1.9
20
88
0
58
31
13
0
55
1.38
14071--14150
42
1.9
42
97
0
151
30
16
22
31
1.96
25902--25931
15
2.0
15
100
0
60
26
26
26
20
1.99
26687--26719
14
2.4
14
94
0
57
0
9
3
87
0.63
29622--29659
19
2.0
19
100
0
76
31
36
10
21
1.87
47282--47306
2
12.5
2
100
0
50
0
0
52
48
1.00
48138--48174
14
2.6
14
86
0
56
75
8
0
16
1.02
48138--48171
7
4.9
7
88
0
50
79
5
0
14
0.91
48451--48680
115
2.0
115
100
0
460
35
26
13
24
1.92
51376--51413
9
4.3
9
84
15
53
81
18
0
0
0.69
51379--51413
18
1.9
18
100
0
70
80
20
0
0
0.72
52495--52626
64
2.1
61
81
10
144
25
30
20
23
1.99

Tables:   1

The End!