Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016696.1 Corchorus olitorius cultivar O-4 contig16729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64119

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8903--8945
20
2.1
21
86
4
61
51
18
20
9
1.74
12258--12297
18
2.1
19
86
9
55
40
12
5
42
1.64
21450--21514
34
2.0
34
91
8
109
43
16
10
29
1.82
30918--31026
54
2.0
54
94
0
191
38
8
16
36
1.79
38977--39057
42
2.0
40
90
4
126
39
23
27
9
1.86
39326--39357
15
2.1
15
100
0
64
6
0
43
50
1.27
39878--39910
2
16.5
2
100
0
66
51
0
0
48
1.00
56337--56485
38
3.9
38
91
2
228
24
18
34
22
1.96
56337--56485
77
1.9
76
89
4
228
24
18
34
22
1.96
56515--56540
6
4.3
6
100
0
52
15
0
34
50
1.45
60194--60224
2
15.5
2
100
0
62
48
0
0
51
1.00
60405--60462
29
2.0
29
86
0
80
32
15
13
37
1.87
63576--63608
11
2.8
12
95
4
59
36
18
9
36
1.82

Tables:   1

The End!