genome.fa.s16703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016703.1 Corchorus olitorius cultivar O-4 contig16736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58354

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188--3228	22	1.9	22	90	5	66	19	46	21	12	1.82
7307--7355	24	2.0	24	92	0	80	26	12	20	40	1.87
12356--12548	96	2.0	96	96	0	359	29	14	26	30	1.95
17343--17436	45	2.2	43	88	7	138	38	22	4	35	1.74
18641--18672	15	2.1	15	100	0	64	31	28	28	12	1.93
24329--24427	43	2.3	43	96	0	180	26	18	13	42	1.86
25481--25513	2	16.5	2	100	0	66	48	0	0	51	1.00
25590--25628	2	19.5	2	100	0	78	48	0	0	51	1.00
29538--29591	22	2.5	22	87	6	74	50	7	9	33	1.62
29936--29980	19	2.2	20	88	7	65	51	13	13	22	1.75
31480--31530	23	2.2	24	89	3	77	50	0	7	41	1.31
31506--31662	84	1.9	84	91	2	262	45	2	9	42	1.50
35453--35503	22	2.3	22	83	6	59	41	9	9	39	1.71
40705--40786	27	3.0	26	79	10	92	26	23	1	48	1.58
40708--40786	28	2.9	27	81	7	97	25	24	1	49	1.58
40862--40902	20	2.0	21	90	4	66	29	14	0	56	1.39
40974--41028	27	2.1	26	86	3	74	25	20	1	52	1.56
41148--41206	18	3.2	18	81	9	75	30	18	0	50	1.47
41168--41218	19	2.7	19	79	11	52	29	17	0	52	1.45
41222--41268	19	2.5	20	75	10	53	25	17	2	55	1.53
41184--41433	51	5.3	44	84	10	293	28	19	1	50	1.56
41247--41490	25	9.6	25	76	17	229	28	19	1	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41247--41490	51	4.8	51	85	12	342	28	19	1	50	1.58
41222--41433	95	2.2	95	97	0	397	28	19	1	50	1.56
41317--41363	19	2.5	19	82	0	67	27	19	0	53	1.45
49385--49447	24	2.7	24	92	2	110	9	38	44	7	1.66
50646--50679	18	1.9	17	88	5	50	11	11	17	58	1.62
50828--50912	37	2.3	37	93	0	143	35	4	7	52	1.49
57821--57859	18	2.2	18	100	0	78	58	10	0	30	1.31

Tables:   1

The End!