Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001671.1 Corchorus olitorius cultivar O-4 contig01671, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32


Found at i:540 original size:65 final size:65

Alignment explanation


    Indices: 454--585  Score: 246
    Period size: 65  Copynumber: 2.0  Consensus size: 65

        444 ATCATAGTAC

                                                                             
        454 CTTCAAAATTTCCTACGTATCAAACAATTTAATTCGAATAGAAAATTGTTCAAAGAAGTAGATTG
          1 CTTCAAAATTTCCTACGTATCAAACAATTTAATTCGAATAGAAAATTGTTCAAAGAAGTAGATTG

                *                                  *                         
        519 CTTCGAAATTTCCTACGTATCAAACAATTTAATTCGAATTGAAAATTGTTCAAAGAAGTAGATTG
          1 CTTCAAAATTTCCTACGTATCAAACAATTTAATTCGAATAGAAAATTGTTCAAAGAAGTAGATTG

              
        584 CT
          1 CT

        586 GAACGGCCGA


Statistics
Matches: 65,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  65   65  1.00

ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33


Consensus pattern (65 bp):   
CTTCAAAATTTCCTACGTATCAAACAATTTAATTCGAATAGAAAATTGTTCAAAGAAGTAGATTG
Done.