Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016711.1 Corchorus olitorius cultivar O-4 contig16744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10637

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531--581
26
2.0
26
96
0
93
52
9
21
15
1.71
891--985
45
2.1
44
81
12
106
41
15
20
23
1.90
941--1236
56
5.3
56
90
0
468
40
13
20
25
1.90
956--1457
112
4.6
112
87
7
746
40
13
20
24
1.89
1186--1278
42
2.2
42
96
0
168
39
15
21
23
1.91
1130--1446
98
3.1
98
84
12
454
41
13
20
24
1.88
1073--1457
154
2.4
155
90
6
583
41
12
20
25
1.87
1019--1446
210
2.0
210
93
0
721
40
14
20
24
1.89
1228--1457
56
4.1
56
97
0
415
41
12
20
25
1.87
916--1457
266
2.0
268
91
2
867
40
13
21
24
1.89
1428--1487
22
2.7
22
82
5
59
46
3
20
30
1.66
1811--2397
68
8.6
68
90
2
874
24
19
29
25
1.99
1811--2397
137
4.3
136
90
2
874
24
19
29
25
1.99
2637--2675
19
2.2
19
86
13
57
12
23
12
51
1.74
3017--3125
50
2.2
50
86
0
146
36
15
14
33
1.88
3401--3440
6
6.2
6
88
11
53
15
15
0
70
1.18
3395--3440
14
3.4
14
85
14
69
15
15
0
69
1.19
3390--3448
21
2.7
23
86
10
95
13
15
0
71
1.15
4608--4760
75
2.0
76
88
1
227
32
21
8
37
1.84
5513--5542
12
2.4
13
94
5
53
43
10
23
23
1.83
7050--7226
52
3.4
51
89
2
273
37
15
18
28
1.91

Tables:   1

The End!