Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016719.1 Corchorus olitorius cultivar O-4 contig16752, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61951

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1021--1056
12
3.0
12
91
0
54
58
0
41
0
0.98
2787--2840
21
2.7
21
80
8
60
40
0
20
38
1.53
4574--4601
2
14.0
2
100
0
56
50
0
0
50
1.00
4947--4980
17
2.1
16
88
5
50
47
0
2
50
1.16
5027--5085
28
2.1
29
81
6
68
44
3
13
38
1.61
8700--8737
18
2.1
19
95
5
69
57
0
34
7
1.28
9243--9280
19
2.0
20
89
5
60
23
18
21
36
1.95
12090--12133
18
2.4
20
75
17
51
72
9
6
11
1.27
13542--13959
38
10.6
39
85
6
449
34
16
15
33
1.90
13542--13971
75
5.4
77
80
11
451
33
16
15
34
1.90
16957--16991
8
4.2
8
85
7
52
71
0
0
28
0.86
16943--16991
17
2.8
17
84
6
62
67
2
2
28
1.13
18514--18596
2
41.5
2
82
0
103
45
0
1
53
1.08
19256--19326
24
2.9
23
74
19
63
38
0
1
60
1.06
19108--19528
180
2.3
176
81
9
494
33
6
8
51
1.60
22565--22618
24
2.2
24
100
0
108
38
11
14
35
1.82
23520--23836
59
5.4
58
82
7
306
22
16
20
41
1.90
27235--27266
16
2.0
16
93
0
55
43
6
3
46
1.44
34518--34542
12
2.1
12
100
0
50
40
24
0
36
1.55
38276--38372
45
2.2
45
88
5
144
36
5
19
39
1.74
40042--40080
16
2.4
16
95
0
69
25
5
20
48
1.70
40042--40090
4
12.2
4
82
0
53
28
4
18
48
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42428--42477
16
3.1
16
82
5
64
54
4
38
4
1.38
43963--44004
22
1.9
22
90
0
66
21
4
26
47
1.70
47795--47859
26
2.9
21
73
20
67
30
6
16
46
1.72
49223--49262
18
2.2
19
95
4
73
32
47
5
15
1.66
49462--49519
26
2.3
26
90
3
100
13
41
24
20
1.89
51430--51471
22
1.9
22
85
9
59
38
7
4
50
1.51
54418--54454
19
2.0
19
89
5
58
62
0
2
35
1.10
61359--61461
31
3.4
30
74
12
95
37
18
12
31
1.88
61921--61951
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!