Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016720.1 Corchorus olitorius cultivar O-4 contig16753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72889

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2780--2849
36
1.9
36
88
0
104
21
8
8
61
1.52
3679--3725
25
1.9
24
95
4
85
55
8
6
29
1.55
3716--3796
39
2.0
40
92
2
137
37
3
8
50
1.51
19230--19288
22
2.5
24
78
15
61
23
22
5
49
1.70
22601--22964
62
5.8
62
93
2
550
32
16
15
35
1.90
22632--23143
124
4.2
121
82
10
456
31
17
17
33
1.93
22632--23024
186
2.1
183
85
7
526
32
16
16
34
1.91
22915--23143
30
7.6
30
94
0
368
29
20
19
30
1.97
24293--24351
22
2.5
24
78
15
61
23
22
5
49
1.70
28225--28268
12
3.6
12
78
6
52
34
15
20
29
1.94
29018--29100
22
3.8
21
76
17
73
57
0
2
39
1.12
29020--29068
25
2.0
25
84
8
64
59
0
0
40
0.98
30560--30605
10
4.6
10
88
0
65
30
6
21
41
1.78
30599--30656
20
3.1
19
73
22
59
36
17
22
24
1.95
35516--35545
10
2.9
10
95
5
51
90
6
3
0
0.56
36630--36664
17
2.0
18
88
5
54
40
14
0
45
1.45
38346--38370
13
1.9
13
100
0
50
44
0
16
40
1.47
39817--39881
23
2.8
23
97
0
121
26
26
12
35
1.91
46723--46788
35
1.9
34
90
3
105
42
13
10
33
1.79
51733--51769
18
2.0
19
89
5
58
43
0
2
54
1.14
52450--52788
178
1.9
178
87
3
495
34
13
16
35
1.88
55742--55778
14
2.6
14
95
0
65
43
8
13
35
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55917--56207
159
1.8
159
85
4
408
29
19
19
31
1.97
64911--64946
18
2.0
18
94
0
63
41
5
19
33
1.75
69817--69861
21
2.1
21
83
0
54
35
31
17
15
1.92

Tables:   1

The End!